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  1. Goby/Alignment-to-counts
  2. Goby/Alignment-to-read-set
  3. Goby/Alignment-to-text
  4. Goby/Compact-file-stats
  5. Goby/Compact-to-fasta
  6. Goby/Concatenate-alignments
  7. Goby/Concatenate-compact-reads
  8. Goby/Count-archive-to-peak-annotations
  9. Goby/Counts-to-bedgraph
  10. Goby/Counts-to-wiggle
  11. Goby/Diff-alignments
  12. Goby/Fasta-to-compact
  13. Goby/Last-to-compact
  14. Goby/Merge-compact-alignments
  15. Goby/Non-redundant
  16. Goby/Reformat-compact-reads
  17. Goby/Sam-to-compact
  18. Goby/Split-compact-reads
  19. Goby/Split-fasta
  20. Goby/Tally-reads
  21. Goby/Version
  22. GobyWeb - Database instance(s)
  23. Hadoop
  24. Installation Instruction 2
  25. Installation Instructions
  26. Installation instruction
  27. Installing a local, development version of GobyWeb
  28. Intercampus Epigenomics Meetings
  29. Jason's test page
  30. Junction BAGET
  31. Junction TBAG
  32. Junctiontbag
  33. Locator run automations
  34. MAQC-II/Parsing Iconix
  35. MIR
  36. Mapreads output to Eland
  37. MasonLab/InSilicoReads
  38. Medpost
  39. MirA
  40. MorhologicalWordVariantDiscovery
  41. Morphological parser
  42. NextGenSeq: post mapping analysis, peak finding, UCSC browser wiggle files, etc
  43. Next generation sequencing journal club
  44. P-values
  45. PAGE Tutorial
  46. PAS
  47. PasA
  48. Passage Consensus
  49. Piana
  50. Plink/howto
  51. Ploytbag
  52. PolyA BAGET
  53. PolyA TBAG
  54. Preprocessing
  55. RLargeProblems
  56. SNVseeqer/Adding a new annotation database
  57. SNitro project
  58. Sandbox
  59. Sqlite3 with python
  60. Structure Language
  61. Support Format
  62. Support Format 2
  63. TEPSS/Ataxia
  64. TREC/2004/index
  65. TREC/2006/Supplementary material to the notebook paper
  66. Test Link/Sub Link
  67. Test level 2
  68. TiSimilarity/AtaxiaTelangiectasia
  69. TiSimilarity/FriedreichAtaxia
  70. TiSimilaritySNO
  71. TiSimilarity Example
  72. TissueInfo/CountsFromTags
  73. Tophat fusion
  74. Tophat tutorial
  75. Trec-gen-2004
  76. Trec-gen-2006
  77. Trec-gen-2006-results
  78. Trec-gen-2007
  79. TubuBromo
  80. Twease/tasks/AutomatedEvaluation
  81. Twease proteins to single disease eval
  82. UsingSpratt2

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