Piana
From Icbwiki
The icb maintains a local installations of the Protein Interactions And Network Analysis (PIANA) database. The MySQL database resides on piana.med.cornell.edu and contains the sample "limited" data distribution and also a locally populated version.
Local database contents
| databaseName | databaseVersion | parsed_file | date | databaseDescription | databaseInteger |
|---|---|---|---|---|---|
| ncbi_taxonomy | April 18 2008 | names.dmp | 2008-4-18 | NCBI Species information | 1 |
| swissprot | April 08 2008 | uniprot_sprot_rg_rx_oh_pe_deleted.dat | 2008-4-18 | Uniprot manually curated database | 2 |
| trembl | April 08 2008 | uniprot_trembl_rg_rx_oh_pe_deleted.dat | 2008-4-18 | Uniprot complete not manually curated database | 4 |
| genpept | April 18 2008 (release 165) | rel165.fsa_aa | 2008-4-19 | ncbi genbank database | 8 |
| nr | April 16 2008 | nr | 2008-4-20 | non-redundant ncbi database | 16 |
| ncbi2pdb_pdbaa | April 16 2008 | pdbaa | 2008-4-21 | correspondence between pdb and gi identifiers | 32 |
| ncbi2uniprot swissprot | April 16 2008 | swissprot | 2008-4-21 | correspondences between uniprot and gi identifiers | 64 |
| pdbsprotec | March 12 2008 | mapping.txt | 2008-4-21 | correspondences between pdb and uniprot identifiers | 128 |
| gene | April 18 2008 | gene2accession | 2008-4-21 | correspondences between ncbi accession number and geneID identifiers | 256 |
| gene_info | April 18 2008 | gene_info | 2008-4-21 | Gene NCBI database - gene_info | 512 |
| refseq | March 13 2008 (release 28) | RefSeq-release28.catalog | 2008-4-21 | NCBI RefSeq Database | 1024 |
| cog-myva=gb | September 26 2002 | myva=gb | 2008-4-21 | Cluster of orthologous genes | 2048 |
| cog | March 05 2003 | whog | 2008-4-21 | Cluster of orthologous genes | 4096 |
| kog-kyva=gb | June 06 2003 | kyva=gb | 2008-4-21 | Eucariotic Cluster of orthologous genes | 8192 |
| kog | July 21 2003 | kog | 2008-4-21 | Eucariotic Cluster of orthologous genes | 16384 |
| scop | Release 1.73 | dir.cla.scop.txt_1.73 | 2008-4-21 | SCOP - Structural Classification of Proteins | 32768 |
| go | April 14 2008 | mysql_database_GO | 2008-4-21 | GO. Gene Ontology | 65536 |
| dip | April 07 2008 | dip20080407.txt | 2008-4-21 | DIP (Database of Interacting Proteins) | 131072 |
| mips | June 01 2004 | temporal_mysql_database | 2008-4-21 | The MIPS Mammalian Protein-Protein Interaction Database | 262144 |
| hprd | September 01 2007 (Release_7) | HPRD_Release_7_09012007.txt | 2008-4-21 | Human Protein Reference Database | 524288 |
| bind | April 15 2008 | temporal_mysql_database | 2008-4-21 | Biomolecular Interaction Network Database | 1048576 |
| intact | March 29 2008 | intact.txt | 2008-4-21 | IntAct protein-protein interaction database | 2097152 |
| biogrid | 2.0.39 | BIOGRID-ALL-SINGLEFILE-2.0.39.tab.txt | 2008-4-21 | The BioGRID's curated set of physical and genetic interactions | 4194304 |
| mint | April 08 2008 | 2008-04-08-full.mitab25.txt | 2008-4-21 | the Molecular INTeraction database | 8388608 |
| ori | January 16 2007 | interact.dat | 2008-4-21 | predicted interactions from distant structure/sequence patterns | 16777216 |
