Piana

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The icb maintains a local installations of the Protein Interactions And Network Analysis (PIANA) database. The MySQL database resides on piana.med.cornell.edu and contains the sample "limited" data distribution and also a locally populated version.

Local database contents

databaseName databaseVersion parsed_file date databaseDescription databaseInteger
ncbi_taxonomy April 18 2008 names.dmp 2008-4-18 NCBI Species information 1
swissprot April 08 2008 uniprot_sprot_rg_rx_oh_pe_deleted.dat 2008-4-18 Uniprot manually curated database 2
trembl April 08 2008 uniprot_trembl_rg_rx_oh_pe_deleted.dat 2008-4-18 Uniprot complete not manually curated database 4
genpept April 18 2008 (release 165) rel165.fsa_aa 2008-4-19 ncbi genbank database 8
nr April 16 2008 nr 2008-4-20 non-redundant ncbi database 16
ncbi2pdb_pdbaa April 16 2008 pdbaa 2008-4-21 correspondence between pdb and gi identifiers 32
ncbi2uniprot swissprot April 16 2008 swissprot 2008-4-21 correspondences between uniprot and gi identifiers 64
pdbsprotec March 12 2008 mapping.txt 2008-4-21 correspondences between pdb and uniprot identifiers 128
gene April 18 2008 gene2accession 2008-4-21 correspondences between ncbi accession number and geneID identifiers 256
gene_info April 18 2008 gene_info 2008-4-21 Gene NCBI database - gene_info 512
refseq March 13 2008 (release 28) RefSeq-release28.catalog 2008-4-21 NCBI RefSeq Database 1024
cog-myva=gb September 26 2002 myva=gb 2008-4-21 Cluster of orthologous genes 2048
cog March 05 2003 whog 2008-4-21 Cluster of orthologous genes 4096
kog-kyva=gb June 06 2003 kyva=gb 2008-4-21 Eucariotic Cluster of orthologous genes 8192
kog July 21 2003 kog 2008-4-21 Eucariotic Cluster of orthologous genes 16384
scop Release 1.73 dir.cla.scop.txt_1.73 2008-4-21 SCOP - Structural Classification of Proteins 32768
go April 14 2008 mysql_database_GO 2008-4-21 GO. Gene Ontology 65536
dip April 07 2008 dip20080407.txt 2008-4-21 DIP (Database of Interacting Proteins) 131072
mips June 01 2004 temporal_mysql_database 2008-4-21 The MIPS Mammalian Protein-Protein Interaction Database 262144
hprd September 01 2007 (Release_7) HPRD_Release_7_09012007.txt 2008-4-21 Human Protein Reference Database 524288
bind April 15 2008 temporal_mysql_database 2008-4-21 Biomolecular Interaction Network Database 1048576
intact March 29 2008 intact.txt 2008-4-21 IntAct protein-protein interaction database 2097152
biogrid 2.0.39 BIOGRID-ALL-SINGLEFILE-2.0.39.tab.txt 2008-4-21 The BioGRID's curated set of physical and genetic interactions 4194304
mint April 08 2008 2008-04-08-full.mitab25.txt 2008-4-21 the Molecular INTeraction database 8388608
ori January 16 2007 interact.dat 2008-4-21 predicted interactions from distant structure/sequence patterns 16777216
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