Piana
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| Revision as of 20:40, 8 May 2008 Marko (Talk | contribs) ← Previous diff |
Revision as of 20:43, 8 May 2008 Marko (Talk | contribs) (→Local database contents) Next diff → |
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| | hprd | | hprd | ||
| | September 01 2007 (Release_7) | | September 01 2007 (Release_7) | ||
| - | | [http://www.hprd.org/download/ HPRD_Release_7_09012007.txt] | + | | n/a |
| - | | Human Protein Reference Database | + | | Human Protein Reference Database ([http://www.hprd.org/download/ HPRD]} |
| |- | |- | ||
| | 4.2.4 | | 4.2.4 | ||
| Line 151: | Line 151: | ||
| | mint | | mint | ||
| | April 08 2008 | | April 08 2008 | ||
| - | | [ftp://mint.bio.uniroma2.it/pub/release/MITAB/ 2008-04-08-full.mitab25.txt] | + | | n/a |
| - | | The Molecular INTeraction database | + | | The Molecular INTeraction database ([ftp://mint.bio.uniroma2.it/pub/release/MITAB/ MINT] |
| |- | |- | ||
| | 4.2.8 | | 4.2.8 | ||
| | ori | | ori | ||
| | January 16 2007 | | January 16 2007 | ||
| - | | [http://sbi.imim.es/piana#db interact.dat] | + | | January 16 2007 |
| - | | predicted interactions from distant structure/sequence patterns | + | | Predicted interactions from distant structure/sequence patterns [http://sbi.imim.es/piana#db interact.dat] |
| |} | |} | ||
Revision as of 20:43, 8 May 2008
The icb maintains a local installations of the Protein Interactions And Network Analysis (PIANA) database. The MySQL database resides on piana.med.cornell.edu and contains a locally populated version along with the sample "limited" data distribution.
Local database contents
| Section | Name | Local Version | Limited Version | Description |
|---|---|---|---|---|
| 4.1.1 | ncbi_taxonomy | April 18 2008 | April 03 2007 | NCBI Species information |
| 4.1.2 | swissprot | April 08 2008 | April 03 2007 | Uniprot manually curated database |
| 4.1.2 | trembl | April 08 2008 | April 03 2007 | Uniprot complete not manually curated database |
| 4.1.3 | genpept | April 18 2008 (release 165) | April 2007 (release 158) | NCBI genbank database |
| 4.1.4 | nr | April 16 2008 | April 2007 | NCBI non-redundant database |
| 4.1.5 | ncbi2pdb_pdbaa | April 16 2008 | April 09 2007 | Correspondence between pdb and gi identifiers (pdbaa) |
| 4.1.6 | ncbi2uniprot swissprot | April 16 2008 | April 09 2007 | Correspondences between uniprot and gi identifiers (swissprot) |
| 4.1.7 | pdbsprotec | March 12 2008 | January 15 2007 | Correspondences between pdb and uniprot identifiers (mapping.txt) |
| 4.1.8 | gene | April 18 2008 | April 19 2007 | Correspondences between NCBI accession number and geneID identifiers (gene2accession) |
| 4.1.9 | gene_info | April 18 2008 | April 19 2007 | Gene NCBI database (gene_info) |
| 4.1.10 | refseq | March 13 2008 (release 28) | March 13 2008 (release 22) | NCBI RefSeq Database |
| 4.1.11 | cog-myva=gb | September 26 2002 | September 26 2002 | Cluster of orthologous genes (myva=gb) |
| 4.1.11 | cog | March 05 2003 | March 05 2003 | Cluster of orthologous genes (whog) |
| 4.1.11 | kog-kyva=gb | June 06 2003 | June 06 2003 | Eucariotic Cluster of orthologous genes (kyva=gb) |
| 4.1.11 | kog | July 21 2003 | July 21 2003 | Eucariotic Cluster of orthologous genes (kog) |
| 4.1.12 | scop | Release 1.73 | Release 1.71 | Structural Classification of Proteins (SCOP) |
| 4.1.13 | go | April 14 2008 | April 2007 | Gene Ontology (GO) |
| 4.2.1 | dip | April 07 2008 | February 19 2007 | Database of Interacting Proteins (DIP) |
| 4.2.2 | mips | June 01 2004 | n/a | The Mammalian Protein-Protein Interaction Database MIPS |
| 4.2.3 | hprd | September 01 2007 (Release_7) | n/a | Human Protein Reference Database (HPRD} |
| 4.2.4 | bind | April 15 2008 | n/a | Biomolecular Interaction Network Database (BOND) |
| 4.2.5 | intact | March 29 2008 | n/a | IntAct protein-protein interaction database |
| 4.2.6 | biogrid | 2.0.39 | n/a | The BioGRID's curated set of physical and genetic interactions |
| 4.2.7 | mint | April 08 2008 | n/a | The Molecular INTeraction database (MINT |
| 4.2.8 | ori | January 16 2007 | January 16 2007 | Predicted interactions from distant structure/sequence patterns interact.dat |
