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The Spratt2 documentation provides most of the information required to run Spratt2. This page lists additional details that can be useful.

In directory projects/gross/3DSNO/structures/pdb-files

spratt2 shorter-list.txt 7 -1 3 1 > shorter-list-spratt2.out

The scop id file required to run postp can be downloaded from

postp shorter-list-spratt2.out shorter-list.txt dir.dom.scop.txt -cover -sc -html > result.html

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