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- PAGE Tutorial (3790 bytes)
40: ...go_orf (uses gene names like TP53, and curated GO categories, no electronic annotation).
43: --pathways=human_go_orf (all GO categories, including electronic annotation)
56: ...reported. --minr=5 will remove a lot of redundant categories.
78: ...you may want to run PAGE for different annotation categories (e.g. KEGG, BioCarta). To change the name of your... - Elementolab/PAGE adding new pathway database (1653 bytes)
27: Get parent categories - Elementolab/ChIPseeqerFIRE (6762 bytes)
59: ...veral peakfiles. This will run FIRE using as many categories as the peakfiles. Useful to compare multiple peak... - Elementolab/ChIPseeqeriPAGE (3843 bytes)
50: ...--minr=FLOAT specifies how independent the categories should be, 0 by default meaning all informative p...
54: ...t file when you run PAGE for different annotation categories (--suffix=KEGG) - Elementolab/Find peaks with motif (1606 bytes)
17: ...t in this file. This can be helpful when multiple categories are used in FIRE - Elementolab/ChIPseeqer GUI (4343 bytes)
13: ! Categories - Elementolab/Find peaks and genes in pathway (2564 bytes)
16: -bin=INT Indicates the categories of genes in PAGE. 0 stands for the background gen...
17: If more input gene categories were used then bin=2 and so on should be used.
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