Elementolab/SNVseeqer format

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Example output from SNVseeqer:

chr10   125982  G       233     6       0       6.352e-03       0.000   -1.000  0.650   5/1/0/0 -
chr10   126401  T       8       8       2       9.920e-19       0.811   -1.000  0.000   0/8/0/0 HMZ

Column definition:

  1. Chromosome or RefSeq mRNA gene id
  2. Position of variation on the chromosome or gene (0-based coordinate)
  3. Reference nucleotide
  4. Total number of unique reads (n)
  5. Number of reads possessing the variation (nk)
  6. Number of reads on forward strand possessing the variation (kF)
  7. adjusted p-value
  8. Entropy (strand)
  9. Dummy column (always -1.0, to be removed)
  10. Entropy (mutation)
  11. Frequency of A/C/G/T nucleotides
  12. Homo-/Heterozygote
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