Elementolab/SNVseeqer Tutorial

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Elementolab/

SNVseeqer is a comprehensive software framework for Single Nucleotide Variation (SNV) discovery and characterization from RNA-seq and DNA-seq data. SNVseeqer uses short reads as input (e.g. Eland or BWA-mapped reads). It is coded in C (and a bit of Perl) and can process hundreds of millions of reads on a normal laptop.

To learn how to install SNVseeqer, click here

To run the SNVseeqer pipeline on reads mapped to RefSeq mRNAs, click here

To run the SNVseeqer pipeline on reads mapped to the genome (e.g. hg18), click here

To use the other SNVseeqer tools, click here

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