Elementolab/MyScanACE

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MyScanACE is a fast, multi-purpose and flexible re-implementation of ScanACE written in C.

To install MyScanACE: 

svn --username guest --password any@email.com co https://pbtech-vc.med.cornell.edu/public/svn/elementolab/MYSCANACE/trunk MYSCANACE/
svn --username guest --password any@email.com co https://pbtech-vc.med.cornell.edu/public/svn/elementolab/BIO-C/trunk BIO-C/ 
cd MYSCANACE
make
export MYSCANACEDIR=/path/to/MYSCANACE   (replace /path/to/ by actual directory names !, eg /Users/olivier/PROGRAMS)

To run MyScanACE 

$MYSCANACEDIR/MyScanACE -j JASPAR_MATRICES/TP53.jaspar -z SEQUENCES/hum_u_2000_d_2000_25Nov2009.fa -c 2 -g 0.51 > TP53.jaspar.matches.txt

To update your version 

svn up
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