Elementolab/ChIPseeqer News

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ChIPseeqer News

  • [12/09/2010] Added the support of RNAGenes annotation. Use ChIPseeqerRNAGenes to get the peaks overlap with known RNA genes.
  • [12/08/2010] ChIPseeqer now also supports the Ensembl annotation (for hg18-human, mm9-mouse and dm3-drosophila), the AceView annotation (for mm9-mouse) and the UCSCGenes annotation (for hg18-human, mm9-mouse).
  • [10/18/2010] ChIPseeqer basic analysis (peak detection, gene annotation) is now also available for Saccharomyces cerevisiae. Use -chrdata *[10/18/2010] ChIPseeqer basic analysis (peak detection, gene annotation) is now also available for Saccharomyces cerevisiae. Use -chrdata DATA/sacser.chrdata option in ChIPseeqer and --genome=sacser option in ChIPseeqerAnnotate and ChIPseeqerSummaryPromoters
  • [09/21/2010] The names of some scripts have changed in order to achieve consistency between them. Details are available in the Tutorial
  • [08/06/2010] QC analysis functions have been added to ChIPseeqer: find number of uniquely mapped reads, clonal reads and GC-rich content
  • [05/13/2010] ChIPseeqer basic analysis (peak detection, gene annotation) is now also available for mouse (mm9) and drosophila melanogaster (dm3)
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