Easy BAGET

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MasonLab

BAGET

TBAG_Tutorial

Usage

For easy usage, the following command is enough to get all the output of BAGET. We recommend to use it on a cluster.

After installation, put your fastq file in the BAGET directory, and then type:

$ perl allinone.pl

The whole process may take about 40 min if you work on a cluster. For more information about the output, please check other part of the tutorial.

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