Icbwiki - Recent changes [en]

http://icb.med.cornell.edu/wiki/index.php?title=Special:Recentchanges&hideanons=1&days=30&limit=250&hideminor=1&hideliu=1&hidepatrolled=1&hidemyself=1&from=20120809111146&feed=atom Icbwiki - Recent changes [en] 2013-06-19T19:04:33Z Track the most recent changes to the wiki on this page. MediaWiki 1.6.8 http://icb.med.cornell.edu/wiki/index.php/PAGE_Tutorial PAGE Tutorial 2013-06-12T23:36:41Z

<p></p> <table border='0' width='98%' cellpadding='0' cellspacing='4' style="background-color: white;"> <tr> <td colspan='2' width='50%' align='center' style="background-color: white;">Revision as of 23:36, 12 June 2013</td> <td colspan='2' width='50%' align='center' style="background-color: white;">Current revision</td> </tr> <tr><td colspan="2" align="left"><strong>Line 56:</strong></td> <td colspan="2" align="left"><strong>Line 56:</strong></td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;">specifies how independent the categories should be, set to 0 by default, meaning all informative categories/pathways will be reported. --minr=5 will remove a lot of redundant categories.</td><td> </td><td style="background: #eee; font-size: smaller;">specifies how independent the categories should be, set to 0 by default, meaning all informative categories/pathways will be reported. --minr=5 will remove a lot of redundant categories.</td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;"></td><td> </td><td style="background: #eee; font-size: smaller;"></td></tr> <tr><td colspan="2"> </td><td>+</td><td style="background: #cfc; font-size: smaller;"> --catmaxcount=INT</td></tr> <tr><td colspan="2"> </td><td>+</td><td style="background: #cfc; font-size: smaller;">specify the maximum number of genes in a category. The default is 300 (Ok for GO, less optimal for Staudt gene sets).</td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;"></td><td> </td><td style="background: #eee; font-size: smaller;"></td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;">* Results</td><td> </td><td style="background: #eee; font-size: smaller;">* Results</td></tr> </table>

Ole2001 http://icb.med.cornell.edu/wiki/index.php/Elementolab/Social_Media Elementolab/Social Media 2013-05-27T19:34:53Z

<p></p> <table border='0' width='98%' cellpadding='0' cellspacing='4' style="background-color: white;"> <tr> <td colspan='2' width='50%' align='center' style="background-color: white;">Revision as of 19:34, 27 May 2013</td> <td colspan='2' width='50%' align='center' style="background-color: white;">Current revision</td> </tr> <tr><td colspan="2" align="left"><strong>Line 46:</strong></td> <td colspan="2" align="left"><strong>Line 46:</strong></td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;"> <script>!function(d,s,id){var js,fjs=d.getElementsByTagName(s)[0];if(!d.getElementById(id)){js=d.createElement(s);js.id=id;js.src="//platform.twitter.com/widgets.js"; </td><td> </td><td style="background: #eee; font-size: smaller;"> <script>!function(d,s,id){var js,fjs=d.getElementsByTagName(s)[0];if(!d.getElementById(id)){js=d.createElement(s);js.id=id;js.src="//platform.twitter.com/widgets.js"; </td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;"> fjs.parentNode.insertBefore(js,fjs);}}(document,"script","twitter-wjs");</script></td><td> </td><td style="background: #eee; font-size: smaller;"> fjs.parentNode.insertBefore(js,fjs);}}(document,"script","twitter-wjs");</script></td></tr> <tr><td colspan="2"> </td><td>+</td><td style="background: #cfc; font-size: smaller;"></td></tr> <tr><td colspan="2"> </td><td>+</td><td style="background: #cfc; font-size: smaller;">* NLTK is a great Python library for NLP</td></tr> <tr><td colspan="2"> </td><td>+</td><td style="background: #cfc; font-size: smaller;"> http://nltk.org/</td></tr> <tr><td colspan="2"> </td><td>+</td><td style="background: #cfc; font-size: smaller;"></td></tr> <tr><td colspan="2"> </td><td>+</td><td style="background: #cfc; font-size: smaller;">An example </td></tr> <tr><td colspan="2"> </td><td>+</td><td style="background: #cfc; font-size: smaller;"> http://bommaritollc.com/2011/02/16/pre-processing-text-rtm-vs-pythonnltk/</td></tr> <tr><td colspan="2"> </td><td>+</td><td style="background: #cfc; font-size: smaller;"></td></tr> <tr><td colspan="2"> </td><td>+</td><td style="background: #cfc; font-size: smaller;">The book</td></tr> <tr><td colspan="2"> </td><td>+</td><td style="background: #cfc; font-size: smaller;"> http://nltk.org/book/</td></tr> </table>

Ole2001 http://icb.med.cornell.edu/wiki/index.php/Elementolab/ Elementolab/ 2013-05-27T19:33:02Z

<p></p> <table border='0' width='98%' cellpadding='0' cellspacing='4' style="background-color: white;"> <tr> <td colspan='2' width='50%' align='center' style="background-color: white;">Revision as of 19:33, 27 May 2013</td> <td colspan='2' width='50%' align='center' style="background-color: white;">Current revision</td> </tr> <tr><td colspan="2" align="left"><strong>Line 103:</strong></td> <td colspan="2" align="left"><strong>Line 103:</strong></td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;">** [http://icb.med.cornell.edu/wiki/index.php/Elementolab/Big_Data Big Data]</td><td> </td><td style="background: #eee; font-size: smaller;">** [http://icb.med.cornell.edu/wiki/index.php/Elementolab/Big_Data Big Data]</td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;">** [http://icb.med.cornell.edu/wiki/index.php/Elementolab/DataVisualization Data Visualization]</td><td> </td><td style="background: #eee; font-size: smaller;">** [http://icb.med.cornell.edu/wiki/index.php/Elementolab/DataVisualization Data Visualization]</td></tr> <tr><td>-</td><td style="background: #ffa; font-size: smaller;">** [http://icb.med.cornell.edu/wiki/index.php/Elementolab/Social_Media Social Media Howtos]</td><td>+</td><td style="background: #cfc; font-size: smaller;">** [http://icb.med.cornell.edu/wiki/index.php/Elementolab/Social_Media Social Media Howtos <span style="color: red; font-weight: bold;">and Natural Language Processing</span>]</td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;"></td><td> </td><td style="background: #eee; font-size: smaller;"></td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;"></td><td> </td><td style="background: #eee; font-size: smaller;"></td></tr> </table>

Ole2001 http://icb.med.cornell.edu/wiki/index.php/Elementolab/ChIPseeqer_Installation Elementolab/ChIPseeqer Installation 2013-05-23T17:35:07Z

<p>/* Files you will need */ </p> <table border='0' width='98%' cellpadding='0' cellspacing='4' style="background-color: white;"> <tr> <td colspan='2' width='50%' align='center' style="background-color: white;">Revision as of 17:35, 23 May 2013</td> <td colspan='2' width='50%' align='center' style="background-color: white;">Current revision</td> </tr> <tr><td colspan="2" align="left"><strong>Line 71:</strong></td> <td colspan="2" align="left"><strong>Line 71:</strong></td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;">|-</td><td> </td><td style="background: #eee; font-size: smaller;">|-</td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;">| zebrafish (zv9)</td><td> </td><td style="background: #eee; font-size: smaller;">| zebrafish (zv9)</td></tr> <tr><td>-</td><td style="background: #ffa; font-size: smaller;">| http://physiology.med.cornell.edu/faculty/elemento/lab/CS_files/<span style="color: red; font-weight: bold;">mm9</span>.tar.gz</td><td>+</td><td style="background: #cfc; font-size: smaller;">| http://physiology.med.cornell.edu/faculty/elemento/lab/CS_files/<span style="color: red; font-weight: bold;">zv9</span>.tar.gz</td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;">|-</td><td> </td><td style="background: #eee; font-size: smaller;">|-</td></tr> <tr><td> </td><td style="background: #eee; font-size: smaller;">| saccharomyces cerevisiae</td><td> </td><td style="background: #eee; font-size: smaller;">| saccharomyces cerevisiae</td></tr> </table>

Eug2002