Goby/Tally-reads
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This mode is used to tally the number of times sequences appear in a set of read files. Exact sequence comparison is performed. It is implemented by edu.cornell.med.icb.goby.modes.TallyReadsMode.java.
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Mode Parameters
The following options are available in this mode
| Flag | Arguments | Required | Description | (-i|--input) | input | yes | Name of the compact input file. |
|---|---|---|---|---|---|---|---|
| (-o|--output) | output | yes | Base name of the filter file output (the resulting file will be the output basename given plus "-keep.filter"). | ||||
| --color-space | color-space | no | When this switch is provided, the sequence are expected in color-space. |
