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This mode is used to split a FASTA/FASTQ file into multiple parts. It is primarily used for splitting FASTA into multiple chunks for Eland with a maximum number of entries per file and one read length per file. It is implemented by edu.cornell.med.icb.goby.modes.SplitFastaMode.java.
The following options are available in this mode
|(-i|--input)||input||yes||The file to split.|
|--max-reads-per-file||max-reads-per-file||no||The maximum number of reads written to a single output file.|
|--split-reads-mod||split-reads-mod||no||The number of read lengths for a file, if 1 each read length will get it's own file. If 50, a file will be generated for read lengths 1-50, another for 51-100, etc.|
|--split-max-length||split-max-length||no||Specify the maximum read length to give its own file|