Goby/Split-fasta
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This mode is used to split a FASTA/FASTQ file into multiple parts. It is primarily used for splitting FASTA into multiple chunks for Eland with a maximum number of entries per file and one read length per file. It is implemented by edu.cornell.med.icb.goby.modes.SplitFastaMode.java.
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Mode Parameters
The following options are available in this mode
| Flag | Arguments | Required | Description |
|---|---|---|---|
| (-i|--input) | input | yes | The file to split. |
| --max-reads-per-file | max-reads-per-file | no | The maximum number of reads written to a single output file. |
| --split-reads-mod | split-reads-mod | no | The number of read lengths for a file, if 1 each read length will get it's own file. If 50, a file will be generated for read lengths 1-50, another for 51-100, etc. |
| --split-max-length | split-max-length | no | Specify the maximum read length to give its own file |
