Elementolab/make PAGE input

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make_PAGE_input.pl

This analysis helps you create an input file for PAGE, given a list of genes.

To run the tools directly from any folder, you need to add the $CHIPSEEQERDIR and $CHIPSEEQERDIR/SCRIPTS to your $PATH variable. Read How to set the CHIPSEEQERDIR variable.

1. Type the command: 

make_PAGE_input.pl --geneslist=geneslist.txt [OR --geneslistFolder=FOLDER] --refgene=DATA/hg18/refSeq

2. See the results.

The output of the script is an ORF.txt file that can be directly used in PAGE (see step 2 in Elementolab/ChIPseeqer_2iPAGE)

IMPORTANT: The input file names must not contain the word "ORF".

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