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	* [http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL_2012/ChIP-seq.pdf PDF version of the vignette]		* [http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL_2012/ChIP-seq.pdf PDF version of the vignette]
	* [http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL_2012/ChIP-seq.R The R code extracted from the vignette (good for cut-and-paste)]		* [http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL_2012/ChIP-seq.R The R code extracted from the vignette (good for cut-and-paste)]
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		+	==Part 3: ENCODE project intoduction ==
		+	Lecture:
		+	* [http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL_2012/CSHL-ENCODE-2012.pdf Slides of the talk]
		+
	The data needed for the labs are available at ...		The data needed for the labs are available at ...

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Revision as of 16:36, 3 July 2012

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Contents 1 2012 CSHL Summer course: Statistical Analysis for Genome Scale Data 1.1 Part 1: Basics of high-throughput sequencing 1.2 Part 2: ChIP-seq analysis 1.3 Part 3: ENCODE project intoduction

2012 CSHL Summer course: Statistical Analysis for Genome Scale Data

Here are the lectures and lab vignettes for the 2012 CSHL summer course where Olivier and Jenny participated.

Part 1: Basics of high-throughput sequencing

Lecture:

• Slides of the talk

Lab:

• PDF version of the vignette
• The R code extracted from the vignette (good for cut-and-paste)

Part 2: ChIP-seq analysis

Lecture:

• Slides of the talk

Lab:

• PDF version of the vignette
• The R code extracted from the vignette (good for cut-and-paste)

Part 3: ENCODE project intoduction

Lecture:

• Slides of the talk

The data needed for the labs are available at ...