Elementolab/2011 CSHL
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| ==Part 1: Basics of high-throughput sequencing== | ==Part 1: Basics of high-throughput sequencing== | ||
| Lecture: | Lecture: | ||
| - | *[http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL-basic-HTS-2011.pdf PDF of the talk] | + | *[http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL_2011/CSHL-basic-HTS-2011.pdf PDF of the talk] |
| Lab: | Lab: | ||
| - | * [http://physiology.med.cornell.edu/faculty/elemento/lab/R/High-throughput-Seq.pdf PDF version of the vignette] | + | * [http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL_2011/High-throughput-Seq.pdf PDF version of the vignette] |
| - | * [http://physiology.med.cornell.edu/faculty/elemento/lab/R/High-throughput-Seq.R The R code extracted from the vignette (good for cut-and-paste)] | + | * [http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL_2011/High-throughput-Seq.R The R code extracted from the vignette (good for cut-and-paste)] |
| ==Part 2: ChIP-seq analysis == | ==Part 2: ChIP-seq analysis == | ||
| Lecture: | Lecture: | ||
| - | * [http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL-ChIPseq-2011.pdf PDF of the talk] | + | * [http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL_2011/CSHL-ChIPseq-2011.pdf PDF of the talk] |
| Lab: | Lab: | ||
| - | * [http://physiology.med.cornell.edu/faculty/elemento/lab/R/BayesPeak-ChIPpeakAnno.pdf PDF version of the vignette] | + | * [http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL_2011/BayesPeak-ChIPpeakAnno.pdf PDF version of the vignette] |
| - | * [http://physiology.med.cornell.edu/faculty/elemento/lab/R/BayesPeak-ChIPpeakAnno.R The R code extracted from the vignette (good for cut-and-paste)] | + | * [http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL_2011/BayesPeak-ChIPpeakAnno.R The R code extracted from the vignette (good for cut-and-paste)] |
| - | The data needed for the labs are available [http://physiology.med.cornell.edu/faculty/elemento/lab/R/data.zip here] | + | The data needed for the labs are available [http://physiology.med.cornell.edu/faculty/elemento/lab/R/CSHL_2011/data.zip here] |
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[edit]
2011 CSHL Summer course: Statistical Analysis for Genome Scale Data
Here are the lectures and lab vignettes for the 2011 CSHL summer course where Olivier and Jenny participated.
[edit]
Part 1: Basics of high-throughput sequencing
Lecture:
Lab:
[edit]
Part 2: ChIP-seq analysis
Lecture:
Lab:
The data needed for the labs are available here
