Reading list

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This pages lists articles of interest that are related to research projects in the Campagne laboratory.

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Methods for resequencing

Direct selection of human genomic loci by microarray hybridization Albert, Thomas J, Molla, Michael N, Muzny, Donna M, et al. Direct selection of human genomic loci by microarray hybridization. Nat Methods 4 (2007 Nov): 903-5. [1]

Okou, David T, Steinberg, Karyn Meltz, Middle, Christina, et al. Microarray-based genomic selection for high-throughput resequencing. Nat Methods 4 (2007 Nov): 907-9. [2]

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Methods for estimating statistical significance

  • ROC Confidence Bands: An Empirical Evaluation. Sofus A. Macskassy, Foster Provost, and Saharon Rosset [3]

Proceedings of the 22nd International Conference on Machine Learning (ICML 2005), Bonn, Germany, 7-11 August, 2005. (also Proceedings of the Second workshop on ROC Analysis in ML, at ICML-2005).

  • Significance Testing against the Random Model for Scoring Models on Top k Predictions. Sofus A. Macskassy (2004). CeDER Working Paper #CeDER-05-09, Stern School of Business, New York University, NY, NY 10012. December 2004. [4]

See also HowTo/EvalTopK for access to the tool and tutorial.

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Biomarker discovery

  • Supervised analysis when the number of candidate features (p) greatly exceeds the number of cases (n). Richard Simon

ACM SIGKDD Explorations Newsletter. Volume 5 , Issue 2 (December 2003) p31-36. [5]

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