Elementolab/ChIPseeqer Supplementary
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Supplementary tools
- Supplementary tools : Find distal peaks (peaks that are distant from known genes)
- Supplementary tools : Given a set of peaks, find closest genes
- Supplementary tools : Extract (maximum/average) reads count for peak regions
- Supplementary tools : Extract/Merge columns from the .genes.annotated.txt file (after ChIPseeqerAnnotate)
- Supplementary tools : Run PAGE with a list of genes
- Supplementary tools : Create density map and sort based on a list of genes/transcripts
- Supplementary tools : Find peak matches with FIRE motif
- Supplementary tools : Plot average read density profile in gene parts: promoters, first exon, first intron, all other exons, all other introns.
- Supplementary tools : Plot average peak numbers in gene parts: promoters, first exon, first intron, all other exons, all other introns.
