Elementolab/ChIPseeqer 2Track

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ChIPseeqer2Track

This analysis helps you create UCSC Genome Browser tracks (WIGL) from the output of ChIPseeqer.

1.Go to the ChIPseeqer-1.0 directory

$ cd ChIPseeqer-1.0/

2. Type the command:

./ChIPseeqer2Track --targets=TF_targets.txt --trackname="TF ChIPseeqer peaks"

This command will create a gzipped file name TF_targets.txt.wgl.gz.

You can then point your Web browser to UCSC Genome Browser, and upload the track in the "Add custom tracks" section (or "Manage custom tracks").

The black bars that you will see in the Genome Browser will correspond to the ChIPseeqer peaks.