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Contents 1 2012 CSHL Summer course: Statistical Analysis for Genome Scale Data 1.1 Part 1: Basics of high-throughput sequencing 1.2 Part 2: ChIP-seq analysis 1.3 Part 3: ENCODE project intoduction

2012 CSHL Summer course: Statistical Analysis for Genome Scale Data

Here are the lectures and lab vignettes for the 2012 CSHL summer course that Olivier and Jenny participated in.

Part 1: Basics of high-throughput sequencing

Lecture:

• Slides of the talk

Lab:

• PDF version of the vignette
• The R code extracted from the vignette (good for cut-and-paste)

Data:

• Data.zip (~1.0G)

Part 2: ChIP-seq analysis

Lecture:

• Slides of the talk

Lab:

• PDF version of the vignette
• The R code extracted from the vignette (good for cut-and-paste)

Data:

• Data2.zip (~7.0M)

Part 3: ENCODE project intoduction

Lecture:

• Slides of the talk