Resource Center > Commercial Microarray Software Resources

Image Quantification | Data Analysis | Functional Analysis Software

[ image quantification resources ]

Array-Pro AnalyzerHigh throughput data analysis software that includes image analysis resources.
GenePix ProStandalone image analysis solution for microarrays, tissue arrays and cell arrays
ImageneImage analysis and data mining for microarray data from BioDiscovery with batch processing capabilities.

[ data analysis resources ]

GeneSpringGenespring is a packaged data mining visualization and analysis software from Agilent Technologies. The Computational Genomics Core Facility (CGCF) at Cornell offers access to GeneSpring via subscription.
GenemathsWindows-based data mining software that can interact with Oracle and SQL Server databases and with the Array-Pro software from Media Cybernetics.
Rosetta ResolverThe Rosetta Resolver system is a versatile and robust enterprise, gene expression data analysis system. It combines advanced analysis software, a high-capacity database, and a high-performance server framework in one comprehensive tool. With the Rosetta Resolver Software Development Kit (SDK), you can customize the Rosetta Resolver system to integrate it with your own databases and analysis tools.
SpotfireSpotfire provides software solutions and services for microarray data analysis. Expression results and current biological annotation information can be easily accessed and merged from any source including text files, Excel or Oracle databases for computation using methods including hierarchical and K-means clustering, expression profile searches and PCA.
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[ functional analysis software ]

Ingenuity (IPA)Ingenuity Pathways Analysis (IPA) leverages a high quality (curated) knowledge base of biological networks, statistical algorithms and an easy-to-use web based software interface towards the functional probing of expression data. The Computational Genomics Core Facility (CGCF) at Cornell offers access to Ingenuity Pathway Analysis software via subscription.
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News
Apr, 2009; The BDVal program developed by the Campagne laboratory for MAQC-II is now available from http://bdval.org. The software supports the development and evaluation of predictive biomarker models from high-throughput data. The web site offers binary and source distributions. [More]
Jan, 2009; Twease now supports searching MEDLINE articles by Author, Journal, and Publication Year. Examples for performing these searches can be found in the updated Twease tutorial. [More]
Jan, 2009; The free bioinformatics walk-in clinics are back and will be available every Monday, 2-4pm at the Weill Cornell Medical Library, in the Computer Room on the lower level. [More]

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Events
Jul 7th; 1:00pm-2:00pm: Understanding Computation in Large Neuronal Networks - Yasser Roudi, Ph.D.; Nordic Institute for Theoretical Physics; LC-504 [Physiology and Biophysics Special Seminar]
Nov 1st: Sequencing of Individual Genomes: Impact on Society and Ethics ; Geneva, Switzerland [HUGO Symposium on Genomics and Ethics, Law and Society]

Microarray links
Microarray Gene Expression Data (MGED) Society
Minimum information about a microarray experiment - MIAME
CAMDA: Critical Assessment of Microarray Data Analysis
EBI Microarray Page
Stanford Microarray Database
NCBI Microarray Introductory Primer
NCI Microarray Center
Lab-on-a-chip.com