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May 2015

Molecular classification of medulloblastoma: clinical utility and biological insight

May 14, 2015 @ 2:00 pm - 3:00 pm
Physiology Conference Room (LC-504),
1300 York Ave, New York, NY 10065 United States
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David J. H. Shih, MSc PhD Student, Cancer Genomics University of Toronto (Postdoctoral Candidate, Ekta Khurana’s Lab)   HOST: Ekta Khurana, Ph.D.

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Linking Cellular Structure/Function to Global State Transitions in Epilepsy

May 15, 2015 @ 4:00 pm - 5:00 pm
ICB Conference Room (Y13.01),
1300 York Ave, New York, NY 10021 United States
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Emre Aksay, PhD   Hosted by Trine Krogh-Madsen, PhD

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A Platform for Developing Bioinformatics Analytics for Cloud, Cluster and Desktop Computers

May 20, 2015 @ 11:00 am - 12:00 pm
Physiology Conference Room (LC-504),
1300 York Ave, New York, NY 10065 United States
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Konstantinos (Ntino) Krampis, Ph.D. Associate Professor Dept. of Biological Sciences, Hunter College Director of Bioinformatics, Center for Translational and Basic Research City University of New York – CUNY Adjunct Assistant Professor Dept. of Physiology and Biophysics Institute for Computational Biomedicine Weill Cornell Medical College   Hosted by Drs. Doron Betel and Olivier Elemento

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June 2015

Chalkboard to Bedside: Translating Insights from Multiscale Evolutionary Mathematical Models to the Clinic

June 3, 2015 @ 11:00 am - 12:00 pm
Physiology Conference Room (LC-504),
1300 York Ave, New York, NY 10065 United States
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Jacob Scott, M.D. Department of Radiation Oncology and Integrative Mathematical Oncology H. Lee Moffitt Cancer Center and Oxford University Centre for Mathematical Biology   Hosted by Harel Weinstein, D.Sc.

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Regulatory Variation from RNA to Protein in Humans and Primates

June 8, 2015 @ 2:00 pm - 3:00 pm
ICB Conference Room (Y13.01),
1300 York Ave, New York, NY 10021 United States
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Zia Khan, Ph.D. Assistant Professor University of Maryland, College Park Center for Bioinformatics and Computational Biology (CBCB)   Understanding how genetic differences affect phenotypic variation within and between species is a central goal of evolutionary and medical genetics. In this talk, I present two stories related to this important goal. The first is a study of mRNA expression and protein abundance divergence between human, chimpanzee, and rhesus macaque lymphoblastoid cell…

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Computational Systems Biology Approaches to Investigate Mechanisms of Progression and Therapeutic Response in Human Cancer

June 11, 2015 @ 4:00 pm - 5:00 pm
Physiology Conference Room (LC-504),
1300 York Ave, New York, NY 10065 United States
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Antonina Mitrofanova, Ph.D. Associate Research Scientist Irving Cancer Research Center Columbia University   Hosted by Olivier Elemento, Ph.D.

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Experiments with MetaR and a Composable R Language Blend User Interfaces and Scripting for More Productive and Accessible Data Analysis

June 12, 2015 @ 4:00 pm - 5:00 pm
ICB Conference Room (Y13.01),
1300 York Ave, New York, NY 10021 United States
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Fabien Campagne, Ph.D.   Hosted by Trine Krogh-Madsen, Ph.D.

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July 2015

CAPRI: Efficient Inference of Selective Advantage Relationships in Cancer Progression

July 9, 2015 @ 2:00 pm - 3:00 pm
ICB Conference Room (Y13.01),
1300 York Ave, New York, NY 10021 United States
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Marco Antoniotti, Ph.D. Associate Professor Dipartimento Informatica Sistemistica e Comunicazione Universit√† Milano Bicocca   Joint work with: Daniele Ramazzotti, Giulio Caravagna, Loes Olde Loohuis, Ilya Korsunsky, Giancarlo Mauri, Bud Mishra   Abstract: Cancer is a disease of evolution whose process is characterized by the accumulation of somatic alterations to the genome, which selectively make a cancer cell fitter to survive. The understanding of progression models for cancer, i.e., the identification…

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Temporal Patterns of Short Non-Coding RNA Modifications and Expression

July 10, 2015 @ 2:00 pm - 3:00 pm
ICB 13th Floor Conference Room,
1305 York Avenue, New York, NY 10021 United States
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Ammar Naqvi, PhD Student Grigoriev Lab Center for Computational and Integrative Biology Rutgers University   Hosted by Ekta Khurana, Ph.D.

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September 2015

Regulatory Signaling Nodes in Vascular Homeostasis Revealed by a Transposon Mutagenesis Screen

September 9, 2015 @ 4:00 pm - 5:00 pm
Weill Auditorium C-200,
1300 York Avenue, 2nd Floor, NewYork City, NY 10065 United States
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Luisa Iruela-Arispe, Ph.D. Professor and Vice-Chair Dept. of Molecular, Cell and Dev. Biology – UCLA Director, Molecular Biology Institute Chair, Molecular Biology IDP   Hosted by Carl Blobel, M.D., Ph.D.

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