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Past Events › Institute for Computational Biomedicine (ICB) Seminar

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June 2015

Computational Systems Biology Approaches to Investigate Mechanisms of Progression and Therapeutic Response in Human Cancer

June 11, 2015 @ 4:00 pm - 5:00 pm
Physiology Conference Room (LC-504),
1300 York Ave, New York, NY 10065 United States
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Antonina Mitrofanova, Ph.D. Associate Research Scientist Irving Cancer Research Center Columbia University   Hosted by Olivier Elemento, Ph.D.

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July 2015

CAPRI: Efficient Inference of Selective Advantage Relationships in Cancer Progression

July 9, 2015 @ 2:00 pm - 3:00 pm
ICB Conference Room (Y13.01),
1300 York Ave, New York, NY 10021 United States
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Marco Antoniotti, Ph.D. Associate Professor Dipartimento Informatica Sistemistica e Comunicazione Università Milano Bicocca   Joint work with: Daniele Ramazzotti, Giulio Caravagna, Loes Olde Loohuis, Ilya Korsunsky, Giancarlo Mauri, Bud Mishra   Abstract: Cancer is a disease of evolution whose process is characterized by the accumulation of somatic alterations to the genome, which selectively make a cancer cell fitter to survive. The understanding of progression models for cancer, i.e., the identification…

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Temporal Patterns of Short Non-Coding RNA Modifications and Expression

July 10, 2015 @ 2:00 pm - 3:00 pm
ICB 13th Floor Conference Room,
1305 York Avenue, New York, NY 10021 United States
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Ammar Naqvi, PhD Student Grigoriev Lab Center for Computational and Integrative Biology Rutgers University   Hosted by Ekta Khurana, Ph.D.

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September 2015

Reconstructing the Evolutionary History of Tumours

September 10, 2015 @ 2:00 pm - 3:00 pm
Physiology Conference Room (LC-504),
1300 York Ave, New York, NY 10065 United States
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Quaid Morris, PhD Associate Professor, Banting and Best Department of Medical Research Departments of Molecular Genetics and Computer Science Toronto ON, Canada   Hosted by Ekta Khurana, Ph.D.

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The Canon of Cancer Medicine

September 14, 2015 @ 11:00 am - 12:00 pm
Physiology Conference Room (LC-504),
1300 York Ave, New York, NY 10065 United States
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Bud Mishra Prof of CS and Math, Courant Inst. The dream of a powerful integrated computational framework, only hinted at in Ibn Sina’s Canon, can now be fulfilled at a global scale as a result of many recent advances: foundational advances in statistical inference; hypothesis-driven experiment design and analysis and the dissemination of peer-reviewed publications among communities of scientists; distributed large-scale databases of scientific and auxiliary experimental data; algorithmic approaches…

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October 2015

Characterization of Hybrid Incompatibility Genes in Drosophila

October 14, 2015 @ 10:00 am - 11:00 am
ICB 13th Floor Conference Room,
1305 York Avenue, New York, NY 10021 United States
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Tawny Cuykendall Department of Molecular Biology & Genetics Cornell University   Hosted by Ekta Khurana, Ph.D.

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Bioinformatics at the NIHR Maudsley Biomedical Research Centre and the SLaM-IoPPN Centre for Translational Informatics: A quick Tour

October 14, 2015 @ 11:00 am - 12:00 pm
Physiology Conference Room (LC-504),
1300 York Ave, New York, NY 10065 United States
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Dr. Stephen J Newhouse Senior Bioinformatician Social Genetic & Developmental Psychiatry Kings College, London, UK   Our research is focused on translational bioinformatics and “Harnessing ‘big biomedical data’ for better clinical care”. We complement the strategic goals of the BRC/U by facilitating  the integration of clinical data from patient records with large biological datasets. The biological data involved derives from disease-focused studies of transcriptomics, genomics, epigenetics, proteomics and neuroimaging. This…

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Learning the ‘Metadata’ of the Cell – Inferring Cellular Phenotypes with Single-Cell Genomics

October 26, 2015 @ 11:00 am - 12:00 pm
Physiology Conference Room (LC-504),
1300 York Ave, New York, NY 10065 United States
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Rahul Satija, D.Phil. Assistant Professor of Biology New York University Department of Biology Center for Genomics and Systems Biology   Hosted by Drs. Doron Betel and Olivier Elemento

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November 2015

Multiplatform Analysis of Molecular Heterogeneity in Cancer

November 9, 2015 @ 11:00 am - 12:00 pm
Physiology Conference Room (LC-504),
1300 York Ave, New York, NY 10065 United States
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Ronglai Shen, Ph.D. Assistant Attending Biostatistician Memorial Sloan-Kettering Cancer Center Department of Epidemiology and Biostatistics   Hosted by Drs. Doron Betel and Olivier Elemento

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December 2015

Structure-Based Prediction of Protein-Protein Interactions on a Genome-Wide Scale

December 7, 2015 @ 11:00 am - 12:00 pm
Physiology Conference Room (LC-504),
1300 York Ave, New York, NY 10065 United States
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Barry Honig, Ph.D. Professor Department of Biochemistry and Molecular Biophysics Department of Systems Biology and Department of Medical Sciences in Medicine Director, Center for Computational Biology and Bioinformatics Investigator, Howard Hughes Medical Institute Columbia University Hosted by Drs. Doron Betel and Olivier Elemento

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