.:institute for computational biomedicine::TissueInfo

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[ description ]

High Throughput identification of tissue expression profiles and specificity.

[ about the method ]

Skrabanek L and Campagne F. TissueInfo: high-throughput identification of tissue expression profiles and specificity. Nucleic Acids Res. 2001 29(21):e102 [PubMed] [Full Text] [Supplementary Material]
Campagne F and Skrabanek L. Mining expressed sequence tags identifies cancer markers of clinical interest. BMC Bioinformatics. 2006 Nov 1;7:481. [PubMed] [Full Text] [Supplementary Material]
TissueInfo has been cited many times in the literature.

[ documentation ]

Visit the following tutorials and learn how to predict the tissue expression profile and specificity for:

EST(s)

Protein(s)

mRNA(s)

The following manual pages are available:

timegablast

tisearch

tiquery

A recent development of Tissueinfo can perform tissue expression profile similarity searches (TEPSS):

TEPSS

[ availability ]

TissueInfo source code and data files are available at: [TissueInfo Distribution]

TissueInfo is also available as a webservice at: [TissueInfo Database Service]

The source code, datafiles, and gene lists for the cancer biomarker study can be found at: [Tissueinfo Cancer Evaluation]

News

Jul, 2009; ChIPseeqer, a comprehensive framework for analysis of ChIP-seq data developed in the Elemento lab, is now available for download. [More]
Apr, 2009; The BDVal program developed by the Campagne laboratory for MAQC-II is now available from http://bdval.org. The software supports the development and evaluation of predictive biomarker models from high-throughput data. The web site offers binary and source distributions. [More]
Jan, 2009; Twease now supports searching MEDLINE articles by Author, Journal, and Publication Year. Examples for performing these searches can be found in the updated Twease tutorial. [More]

[News Archives] [Mailing List]

Events

Dec 11th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Fabien Campagne; ICB Conference Room - Y.1301
Jan 15th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Lei Shi; ICB Conference Room - Y.1301
Feb 12th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Christopher E. Mason; ICB Conference Room - Y.1301
Mar 12th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Olivier Elemento; ICB Conference Room - Y.1301
Apr 9th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Emre Aksay; ICB Conference Room - Y.1301
May 14th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Jonathan D. Victor; ICB Conference Room - Y.1301
Jun 11th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Harel Weinstein; ICB Conference Room - Y.1301
Jul 9th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Duane Hassane; ICB Conference Room - Y.1301