institute for computational biomedicine: SigPath

CRT home > February 2005 production release

A new production release of SigPath is now available. This production release includes features presented in the previous beta release.

This new release offers new features and many bug fixes. Major new features include:

For users:

Data submitted by participants to the first SigPath workshop is now available! A special thanks to the workshop partcipants for their feedback and for sharing these data with the community.

When a user is logged in, a new link at the top left of the page links to the user details page.

Redesigned user detail pages. These pages can now be sorted by columns. New columns have added to allow sorting submitted information by type, name, data submitted and date modified.

The view all user page can now be sorted by any column. The number of registered users is shown on the top.

A new link leads directly from the SigPath main page to the bug tracker. Please use this link to report problems with SigPath and check progress on their resolution.

SigPath now links small molecules to the NCI open browser. Click on NICO database link in small molecules pages.

A new biowizard option let users create complexes through the web interface.

Spids can now be used to select molecules in the Biowizard (Fixed mantis bug #0000729)

Background information has been updated. This version of SigPath is built with SwissProt v45 and a subset of TrEMBL v28 (445,273 proteins).

For developers:

The SigPath project was awarded an open-source license for Clover (see http://www.cenqua.com/clover). Clover makes it possible to generate code coverage reports. Such reports are created with the automatic project builds and published on the web. Historical views show how coverage evolves from build to build.

code snapshots of the new production release can be downloaded from:

SigPath Source Code: sigpath_20050204194529.zip [18 MB, 4th Feb 2005]

Detailed installation instructions: [HTML] [PDF]

Please submit reports of specific problems or feature requests directly in our bug tracker, or email us your feedback to icb@cornell.

The SigPath Team.

SigPath Production

SigPath Navigator

Project Overview

Contributing to Sigpath

SigPath News

Jul 25th, 2005; New SigPath beta release [Release info]
Feb 9th, 2005; New SigPath production release [Release info]
Dec 9-11th, 2004; The First SigPath workshop was held in New York City. [Workshop info]
Nov 3rd, 2004; New SigPath beta release [Release info]
Oct 29th, 2004; New SigPath production released [Release info]
Sep 22nd, 2004; New beta release of SigPath available for preview and testing. [Release info]
Sep 3rd, 2004; A description of SigPath is now available in Science STKE. SigPath users may now cite it as Quantitative information management for the biochemical computation of cellular networks. Campagne F, Neves S, Chang CW, Skrabanek L, Ram PT, Iyengar R, Weinstein H. Science STKE 248:PL11. (2004). [SigPath]
Mar 2nd, 2004; A new release of SigPath is now available. [SigPath]
Mar 1st, 2004; SigPath is now released under the GNU General Public License [download source code]

[older news]

Events

May 14-15, 2008 Cornell University Life Sciences Research Resources Expo. An intercampus exhibition of Cornell core facilities. [More]
Jul 19-23, 2008 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) A forum for disseminating the latest developments in bioinformatics. [ISMB 2008]