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Importing interactions with XML

Biochemical interactions can be submitted into SigPath as XML files. While SigPath provides user-friendly BioWizards, advanced users will often prefer to submit large amounts of data through XML. For instance, complexes identified from high-throughput protein-protein interaction maps can be converted to the SigPath XML format and imported.

Submission of interactions as XML files is illustrated in the following tutorial:

Viewlet

[Note: To view the animated tutorials you need a Macromedia Flash Player. If your browser does not have a flash player plugin you can download it from the Macromedia web site]

Details on the XML submission format and the required schema is available on the XML Submission Details page.

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SigPath News

Jul 25th, 2005; New SigPath beta release [Release info]
Feb 9th, 2005; New SigPath production release [Release info]
Dec 9-11th, 2004; The First SigPath workshop was held in New York City. [Workshop info]
Nov 3rd, 2004; New SigPath beta release [Release info]
Oct 29th, 2004; New SigPath production released [Release info]
Sep 22nd, 2004; New beta release of SigPath available for preview and testing. [Release info]
Sep 3rd, 2004; A description of SigPath is now available in Science STKE. SigPath users may now cite it as Quantitative information management for the biochemical computation of cellular networks. Campagne F, Neves S, Chang CW, Skrabanek L, Ram PT, Iyengar R, Weinstein H. Science STKE 248:PL11. (2004). [SigPath]
Mar 2nd, 2004; A new release of SigPath is now available. [SigPath]
Mar 1st, 2004; SigPath is now released under the GNU General Public License [download source code]

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May 14-15, 2008 Cornell University Life Sciences Research Resources Expo. An intercampus exhibition of Cornell core facilities. [More]
Jul 19-23, 2008 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) A forum for disseminating the latest developments in bioinformatics. [ISMB 2008]