CRT home > SigPath features


Binding BioWizard

SigPath's BioWizards are user interfaces designed to feel user-friendly to Biologists. The binding BioWizard allow users to submit new complexes to SigPath. The following types of complexes are currently supported, with arbitrary stoechiometry:

Protein-protein complexes.

Protein-small molecule complexes.

Small molecule-small molecules complexes.

The binding BioWizard guides the user through the selection of the molecules involved in the complex, as well as the interaction sites on each proteins, or the publications that describe the interaction. When the complex is formed through a second order reaction, the user can also enter the kinetic constants which are needed for quantitative simulations. Some of these parameters are optional and can be entered at a latter time, potentially by a different user than the original submitter for the interaction.

The current prototype of SigPath has limited support for the reviewing of the information submitted, so that submissions to the information system must be co-ordinated with the members of the project.

The binding BioWizard is illustrated in the following tutorial:


Viewlet tutorial for the binding biowizard

[Note: To view the animated tutorials you need a Macromedia Flash Player. If your browser does not have a flash player plugin you can download it from the Macromedia web site]


SigPath News

Jul 25th, 2005; New SigPath beta release [Release info]
Feb 9th, 2005; New SigPath production release [Release info]
Dec 9-11th, 2004; The First SigPath workshop was held in New York City. [Workshop info]
Nov 3rd, 2004; New SigPath beta release [Release info]
Oct 29th, 2004; New SigPath production released [Release info]
Sep 22nd, 2004; New beta release of SigPath available for preview and testing. [Release info]
Sep 3rd, 2004; A description of SigPath is now available in Science STKE. SigPath users may now cite it as Quantitative information management for the biochemical computation of cellular networks. Campagne F, Neves S, Chang CW, Skrabanek L, Ram PT, Iyengar R, Weinstein H. Science STKE 248:PL11. (2004). [SigPath]
Mar 2nd, 2004; A new release of SigPath is now available. [SigPath]
Mar 1st, 2004; SigPath is now released under the GNU General Public License [download source code]

[older news]


Events
Dec 11th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Fabien Campagne; ICB Conference Room - Y.1301
Jan 15th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Lei Shi; ICB Conference Room - Y.1301
Feb 12th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Christopher E. Mason; ICB Conference Room - Y.1301
Mar 12th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Olivier Elemento; ICB Conference Room - Y.1301
Apr 9th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Emre Aksay; ICB Conference Room - Y.1301
May 14th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Jonathan D. Victor; ICB Conference Room - Y.1301
Jun 11th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Harel Weinstein; ICB Conference Room - Y.1301
Jul 9th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Duane Hassane; ICB Conference Room - Y.1301