Hierarchy For All Packages

Package Hierarchies:

edu.mssm.crover.cli, org.sigpath.action, org.sigpath.action.biowizard, org.sigpath.action.edit, org.sigpath.action.model, org.sigpath.action.review, org.sigpath.adapter, org.sigpath.admin, org.sigpath.axis.generator, org.sigpath.axis.generator.ws, org.sigpath.axis.navigator, org.sigpath.axis.navigator.ws, org.sigpath.axis.navigatorcastor, org.sigpath.axis.navigatorcastor.ws, org.sigpath.bioimport, org.sigpath.bioimport.geneways, org.sigpath.bioimport.reaction2, org.sigpath.bioimport.reaction2.types, org.sigpath.bioimport.sbml, org.sigpath.bioimport.sbml.types, org.sigpath.bioimport.xml, org.sigpath.database, org.sigpath.datamodel, org.sigpath.datamodel.keywords, org.sigpath.datamodel.kinetic, org.sigpath.datamodel.lset, org.sigpath.datamodel.models, org.sigpath.datamodel.modifications, org.sigpath.datamodel.naming, org.sigpath.datamodel.reviews, org.sigpath.form, org.sigpath.form.edit, org.sigpath.form.review, org.sigpath.fulltext, org.sigpath.model, org.sigpath.navigator, org.sigpath.navigator.components, org.sigpath.navigator.controllers, org.sigpath.navigator.forms, org.sigpath.navigator.mapping, org.sigpath.navigator.memorystore, org.sigpath.navigator.models, org.sigpath.navigator.util, org.sigpath.reference, org.sigpath.taglib, org.sigpath.tapestry, org.sigpath.tapestry.components, org.sigpath.tapestry.components.table, org.sigpath.tapestry.generated.pages, org.sigpath.tapestry.model, org.sigpath.tapestry.multipart, org.sigpath.tapestry.pages, org.sigpath.tapestry.pages.model, org.sigpath.tapestry.pages.reactions, org.sigpath.tapestry.services, org.sigpath.tapestry.util, org.sigpath.task, org.sigpath.task.axis, org.sigpath.task.diagrams, org.sigpath.task.edit, org.sigpath.task.model, org.sigpath.task.navigator, org.sigpath.task.navigator.export, org.sigpath.task.navigator.save, org.sigpath.task.review, org.sigpath.task.spid, org.sigpath.task.util, org.sigpath.task.xml, org.sigpath.task.xml.export, org.sigpath.user, org.sigpath.util, org.sigpath.util.formula, org.sigpath.util.xml

Class Hierarchy

• java.lang.Object
  • org.apache.tapestry.asset.AbstractAsset (implements org.apache.tapestry.IAsset)
    • org.sigpath.tapestry.services.ViewModelImageAsset
  • javax.swing.AbstractCellEditor (implements javax.swing.CellEditor, java.io.Serializable)
    • org.sigpath.navigator.components.CheckBoxCellEditor (implements java.util.Observer, javax.swing.table.TableCellEditor)
  • org.apache.tapestry.engine.AbstractService (implements org.apache.tapestry.engine.IEngineService)
    • org.apache.tapestry.engine.HomeService
      • org.sigpath.tapestry.util.SigPathHomeService
    • org.sigpath.tapestry.services.ViewModelImageService
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • javax.swing.table.DefaultTableModel (implements java.io.Serializable)
      • org.sigpath.navigator.components.PropertiesTableModel
    • org.sigpath.navigator.components.ReferencesTableModel
    • org.sigpath.navigator.components.SubmissionErrorsTableModel
    • org.sigpath.navigator.components.SubmissionTableModel
  • org.apache.struts.action.Action
    • org.sigpath.action.ActionRoot
      • org.sigpath.action.ChangeDBStatus (implements org.sigpath.action.SecureAdmin)
      • org.sigpath.action.edit.CreateAlias (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.edit.CreateExternalReference
      • org.sigpath.action.CreateModel (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.CreatePathway (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.biowizard.CreateReaction (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.review.CreateReview (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.edit.DeleteAlias (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.DeleteConcentration (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.edit.DeleteExternalReference
      • org.sigpath.action.DisplayJSP
        • org.sigpath.action.SecureDBWriteDisplayJSP (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
        • org.sigpath.action.SecureDisplayJSP (implements org.sigpath.action.Secure)
          • org.sigpath.action.SecureAdminDisplayJSP (implements org.sigpath.action.SecureAdmin)
      • org.sigpath.action.edit.EditExternalReference
      • org.sigpath.action.edit.EditReaction
      • org.sigpath.action.edit.EditSigPathEntity (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.model.ExportJSimModel
      • org.sigpath.action.model.ExportModelKK
      • org.sigpath.action.review.GetAllPendingReviews (implements org.sigpath.action.Secure)
      • org.sigpath.action.GetConcentration (implements org.sigpath.action.Secure)
      • org.sigpath.action.GetModel
      • org.sigpath.action.review.GetPendingReview
      • org.sigpath.action.GetSpidRange
      • org.sigpath.action.Login
      • org.sigpath.action.PopulateUserData (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.RetrieveChemical (implements org.sigpath.action.Secure)
        • org.sigpath.action.SetupConcentration (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.SaveConcentration (implements org.sigpath.action.Secure)
      • org.sigpath.action.edit.SaveEditAlias (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.edit.SaveEditReaction
      • org.sigpath.action.SaveUpdatedReaction (implements org.sigpath.action.Secure)
      • org.sigpath.action.SaveXML (implements org.sigpath.action.Secure)
      • org.sigpath.action.SearchChemicals
      • org.sigpath.action.SearchModels
      • org.sigpath.action.SearchPathways
      • org.sigpath.action.SearchReactions
      • org.sigpath.action.review.SpecifyReactions (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.StoreAffiliation
      • org.sigpath.action.StoreConcentration (implements org.sigpath.action.Secure)
      • org.sigpath.action.StoreNextPage
      • org.sigpath.action.biowizard.StoreReaction (implements org.sigpath.action.Secure)
      • org.sigpath.action.biowizard.StoreReactionParameters (implements org.sigpath.action.Secure)
      • org.sigpath.action.StoreUserData
      • org.sigpath.action.TurnXDebugOn_Off
      • org.sigpath.action.UpdateAffiliation (implements org.sigpath.action.Secure)
      • org.sigpath.action.UpdateReactionParameters (implements org.sigpath.action.Secure)
      • org.sigpath.action.UpdateUserData (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.UploadXML (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
      • org.sigpath.action.ViewDBInfo
      • org.sigpath.action.ViewDetails
      • org.sigpath.action.ViewModelImage
      • org.sigpath.action.ViewModelImageNone
      • org.sigpath.action.ViewModelImageYFiles
      • org.sigpath.action.ViewNamedChemicalImageYFiles
      • org.sigpath.action.ViewSPEBaseInfo (implements org.sigpath.action.DBWriteAccess, org.sigpath.action.Secure)
    • org.sigpath.action.SnoopHTTP
  • org.apache.struts.action.ActionForm (implements java.io.Serializable)
    • org.sigpath.form.Login
    • org.sigpath.form.NextPrevious
    • org.sigpath.form.SelectInteractionType
    • org.sigpath.form.SelectMolecule
    • org.sigpath.form.SpecifyAffiliation
    • org.sigpath.form.edit.SpecifyAlias
    • org.sigpath.form.SpecifyConcentration
    • org.sigpath.form.SpecifyDBStatus
    • org.sigpath.form.review.SpecifyDescription
    • org.sigpath.form.SpecifyModelImage
    • org.sigpath.form.edit.SpecifyModifiedEntity
    • org.sigpath.form.SpecifyPagedResults
      • org.sigpath.form.SpecifyModelSearch
      • org.sigpath.form.SpecifyMoleculeSearch
      • org.sigpath.form.SpecifyPendingReview
      • org.sigpath.form.review.SpecifyPendingReview
      • org.sigpath.form.SpecifyReactionSearch
    • org.sigpath.form.SpecifyPathway
      • org.sigpath.form.SpecifyModel
    • org.sigpath.form.SpecifyReactionParameters
    • org.sigpath.form.review.SpecifyReactionsByDate
    • org.sigpath.form.review.SpecifyReactionsByKeyword
    • org.sigpath.form.review.SpecifyReactionsByUser
    • org.sigpath.form.review.SpecifyReactionsForm
    • org.sigpath.form.SpecifySigPathEntity
      • org.sigpath.form.SpecifyExternalReference
    • org.sigpath.form.SpecifyUserData
    • org.sigpath.form.SpecifyXMLFile
    • org.sigpath.form.UpdateAffiliation
    • org.sigpath.form.UpdateUserData
  • org.sigpath.bioimport.geneways.ActionType (implements java.io.Serializable)
    • org.sigpath.bioimport.geneways.Action (implements java.io.Serializable)
  • org.sigpath.datamodel.ActivityMappingImpl (implements org.sigpath.datamodel.ActivityMapping)
  • org.sigpath.util.AddInitUsers
  • org.sigpath.util.AddOffsetToSpids
  • org.sigpath.user.Address
  • org.sigpath.admin.Admin
  • org.sigpath.admin.AdminTaskRouter (implements java.awt.event.ActionListener)
  • org.sigpath.user.Affiliation (implements javax.jdo.InstanceCallbacks)
  • org.sigpath.bioimport.xml.AliasesType (implements java.io.Serializable)
    • org.sigpath.bioimport.xml.Aliases (implements java.io.Serializable)
  • org.sigpath.database.AllExportableInstanceSource (implements org.sigpath.database.DataSource)
  • org.apache.lucene.analysis.Analyzer
    • org.sigpath.fulltext.SigPathAnalyzer
  • org.sigpath.bioimport.sbml.Annotation (implements java.io.Serializable)
  • org.sigpath.util.Authenticate (implements java.io.Serializable)
  • org.sigpath.axis.navigatorcastor.ws.BackwardReferences (implements java.io.Serializable)
  • org.sigpath.util.Base64
  • org.apache.tapestry.spec.BaseLocatable (implements org.apache.tapestry.ILocationHolder)
    • org.apache.tapestry.AbstractComponent (implements org.apache.tapestry.IComponent)
      • org.apache.tapestry.link.AbstractLinkComponent (implements org.apache.tapestry.components.ILinkComponent)
        • org.apache.tapestry.link.ExternalLink
          • org.sigpath.tapestry.components.PopupPageLink
      • org.apache.tapestry.BaseComponent
        • org.apache.tapestry.AbstractPage (implements org.apache.tapestry.IPage)
          • org.apache.tapestry.html.BasePage
            • org.sigpath.tapestry.pages.model.ChooseSBMLExportOptionsPage (implements org.apache.tapestry.IExternalPage)
            • org.sigpath.tapestry.pages.EditKineticInteractionPage (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.EditPublicationsPage (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.generated.pages.GenericViewChangeLog (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.generated.pages.GenericViewExternalReference (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.generated.pages.GenericViewExternalReferences (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.generated.pages.GenericViewLiteratureReference (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.generated.pages.GenericViewLiteratureReferences (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.generated.pages.GenericViewParameter (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.generated.pages.GenericViewReaction (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.generated.pages.GenericViewSigPathEntity (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.generated.pages.GenericViewUserComment (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.pages.Help (implements org.apache.tapestry.IExternalPage)
            • org.sigpath.tapestry.components.SpidSelectionForm (implements org.apache.tapestry.IExternalPage)
            • org.sigpath.tapestry.pages.SubmitNamedChemicalPage
            • org.sigpath.tapestry.pages.UserCommentFormPage (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.pages.ValidatedPage (implements org.apache.tapestry.event.PageValidateListener)
              • org.sigpath.tapestry.pages.AddKinetic (implements org.apache.tapestry.event.PageRenderListener)
              • org.sigpath.tapestry.pages.AddXMLPublication (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
              • org.sigpath.tapestry.pages.AddXMLUserComment (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
              • org.sigpath.tapestry.pages.AssembleReaction (implements org.apache.tapestry.IExternalPage)
              • org.sigpath.tapestry.pages.model.ModelValidated
                • org.sigpath.tapestry.pages.model.AddCompartments (implements org.apache.tapestry.event.PageRenderListener)
                • org.sigpath.tapestry.pages.model.AddReactions (implements org.apache.tapestry.event.PageRenderListener)
                • org.sigpath.tapestry.pages.model.ModelHomePage (implements org.apache.tapestry.IExternalPage)
                • org.sigpath.tapestry.pages.model.ViewExcludedReactions (implements org.apache.tapestry.event.PageRenderListener)
                • org.sigpath.tapestry.pages.model.ViewMiscInformation
                • org.sigpath.tapestry.pages.model.ViewModelCompartments (implements org.apache.tapestry.event.PageRenderListener)
                • org.sigpath.tapestry.pages.model.ViewModelReactions
            • org.sigpath.tapestry.ViewAllEntitiesPage (implements org.apache.tapestry.IExternalPage)
            • org.sigpath.tapestry.pages.model.ViewCompartment
            • org.sigpath.tapestry.pages.ViewKineticInteractionPage (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.pages.ViewModelImagePage (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.pages.reactions.ViewNamedChemicalInteractionPage (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.pages.ViewPathwayPage (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.pages.ViewUnknownTypePage (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.pages.ViewUserPage (implements org.apache.tapestry.IExternalPage, org.apache.tapestry.event.PageRenderListener)
            • org.sigpath.tapestry.pages.ViewUsersPage (implements org.apache.tapestry.event.PageRenderListener)
        • org.sigpath.tapestry.components.Border (implements org.apache.tapestry.event.PageRenderListener)
        • org.sigpath.tapestry.components.PubMed
        • org.sigpath.tapestry.components.ReactionRender
        • org.sigpath.tapestry.components.SearchMolecules
        • org.sigpath.tapestry.components.table.SpEntityList
        • org.sigpath.tapestry.components.table.SpEntitySelection (implements org.sigpath.tapestry.components.table.ISpEntitySelectionListener)
        • org.sigpath.tapestry.components.table.ViewEditTable
        • org.sigpath.tapestry.components.ViewEditUserComments
        • org.sigpath.tapestry.components.ViewXML
  • org.sigpath.task.util.BaseTask
    • org.sigpath.task.navigator.TExportBase
      • org.sigpath.task.navigator.export.TExportChangeLog
      • org.sigpath.task.navigator.export.TExportComplex
      • org.sigpath.task.navigator.export.TExportConcentrationMeasurement
      • org.sigpath.task.navigator.export.TExportEnzymaticReaction
      • org.sigpath.task.navigator.export.TExportKinetic
      • org.sigpath.task.navigator.export.TExportKineticCustom
      • org.sigpath.task.navigator.export.TExportLiteratureReference
      • org.sigpath.task.navigator.export.TExportLiteratureReferences
      • org.sigpath.task.navigator.export.TExportModel
      • org.sigpath.task.navigator.export.TExportModifiedChemical
      • org.sigpath.task.navigator.export.TExportNamedChemical
      • org.sigpath.task.navigator.export.TExportNamedChemicalInteraction
      • org.sigpath.task.navigator.export.TExportOrganism
      • org.sigpath.task.navigator.export.TExportPathway
      • org.sigpath.task.navigator.export.TExportPendingList
      • org.sigpath.task.navigator.export.TExportProtein
      • org.sigpath.task.navigator.export.TExportReaction
      • org.sigpath.task.navigator.export.TExportSmallMolecule
      • org.sigpath.task.navigator.export.TExportUserComment
  • org.sigpath.util.BenchmarkStatistics
  • org.sigpath.bioimport.reaction2.BindingDeclaration (implements java.io.Serializable)
  • org.sigpath.datamodel.kinetic.BindingSet (implements javax.jdo.InstanceCallbacks)
  • org.sigpath.tapestry.util.BindingTypeModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.bioimport.reaction2.Change_log (implements java.io.Serializable)
  • org.sigpath.datamodel.ChangeLog
  • org.sigpath.datamodel.kinetic.ChemicalComparator (implements java.util.Comparator<T>)
  • org.sigpath.admin.ChemicalConverter (implements java.awt.event.ActionListener)
  • edu.mssm.crover.cli.CLI
  • org.sigpath.datamodel.lset.CollectableImpl (implements org.sigpath.datamodel.lset.Collectable)
    • org.sigpath.datamodel.keywords.Keyword (implements javax.jdo.InstanceCallbacks)
    • org.sigpath.datamodel.SigPathEntityImpl (implements javax.jdo.InstanceCallbacks, org.sigpath.datamodel.SigPathEntity)
      • org.sigpath.datamodel.models.BasePathway
        • org.sigpath.datamodel.models.Model
        • org.sigpath.datamodel.models.Pathway
      • org.sigpath.datamodel.ChemicalImpl (implements org.sigpath.datamodel.Chemical)
        • org.sigpath.datamodel.BioPolymerImpl (implements org.sigpath.datamodel.BioPolymer)
          • org.sigpath.datamodel.ProteinImpl (implements org.sigpath.datamodel.Protein)
        • org.sigpath.datamodel.ComplexImpl (implements org.sigpath.datamodel.Complex)
        • org.sigpath.datamodel.NamedChemical
        • org.sigpath.datamodel.SmallMoleculeImpl (implements org.sigpath.datamodel.SmallMolecule)
      • org.sigpath.datamodel.ConcentrationMeasurementImpl (implements org.sigpath.datamodel.ConcentrationMeasurement)
      • org.sigpath.datamodel.InteractionImpl (implements org.sigpath.datamodel.Interaction)
        • org.sigpath.datamodel.KineticInteractionImpl (implements org.sigpath.datamodel.KineticInteraction)
          • org.sigpath.datamodel.EnzymaticReactionImpl (implements org.sigpath.datamodel.EnzymaticReaction)
          • org.sigpath.datamodel.ReactionImpl (implements org.sigpath.datamodel.Reaction)
        • org.sigpath.datamodel.NamedChemicalInteraction
      • org.sigpath.datamodel.Kinetic
        • org.sigpath.datamodel.KineticCustom
        • org.sigpath.datamodel.KineticReference
          • org.sigpath.datamodel.KineticMassAction
          • org.sigpath.datamodel.KineticMichaelisMenten
      • org.sigpath.datamodel.reviews.PendingListImpl (implements org.sigpath.datamodel.reviews.PendingList)
  • org.sigpath.util.CombiningIterator (implements java.util.Iterator<E>)
  • org.sigpath.action.biowizard.CommonUtil
  • org.sigpath.navigator.mapping.CompactNodesMapping (implements org.sigpath.navigator.mapping.MappingStrategy)
  • org.sigpath.bioimport.reaction2.Compartment (implements java.io.Serializable)
  • org.sigpath.datamodel.models.Compartment
  • org.sigpath.tapestry.components.table.CompartmentComparator (implements java.util.Comparator<T>)
  • org.sigpath.tapestry.util.CompartmentModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.tapestry.util.CompartmentNameModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.bioimport.reaction2.Complex (implements java.io.Serializable)
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • org.sigpath.admin.ActionLog
          • org.sigpath.navigator.components.NavigatorCellRenderer (implements javax.swing.tree.TreeCellRenderer)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.sigpath.navigator.GraphicsView (implements java.util.Observer)
              • org.sigpath.navigator.NavigatorMainFrame
            • org.sigpath.navigator.util.NavigatorDialogs
            • org.sigpath.navigator.components.NavigatorFrame
              • org.sigpath.navigator.forms.AboutForm
              • org.sigpath.navigator.forms.EditPathwayForm
              • org.sigpath.navigator.forms.LoginForm
            • org.sigpath.admin.ProgressBar (implements java.awt.event.ActionListener)
            • org.sigpath.navigator.forms.URLEntry (implements java.util.Observer)
              • org.sigpath.navigator.forms.ConnectionForm
              • org.sigpath.navigator.forms.StartupConnectionForm
  • org.sigpath.bioimport.reaction2.Components (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Concentration_measurement (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Concentration_measurements (implements java.io.Serializable)
  • org.sigpath.tapestry.ConcentrationUnitModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.tapestry.util.ConcentrationUnitModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.bioimport.reaction2.CustomKinetic (implements java.io.Serializable)
  • org.sigpath.datamodel.Databases
  • org.sigpath.database.DBInformation
  • org.sigpath.util.DBStatusMessager
  • org.sigpath.task.DBTask (implements org.sigpath.task.Task)
    • org.sigpath.task.review.SampleReviewData
    • org.sigpath.task.edit.TAddAlias
    • org.sigpath.task.review.TAddChemicals
    • org.sigpath.task.TAddConcentration
    • org.sigpath.task.TAddModel
    • org.sigpath.task.TAddPathway
    • org.sigpath.task.review.TAddReactions
    • org.sigpath.task.TCheckDBAlive
    • org.sigpath.task.TCheckDeletePermission
    • org.sigpath.task.xml.TConfirmComponent
    • org.sigpath.task.xml.TConfirmReactions
      • org.sigpath.task.xml.TConfirmEnzymatic
    • org.sigpath.task.edit.TConvertChemical
    • org.sigpath.task.edit.TConvertSPIDsToBIDs
    • org.sigpath.task.edit.TConvertVMaxToKp
    • org.sigpath.task.edit.TCreateExternalReference
    • org.sigpath.task.review.TCreateNewPendingList
    • org.sigpath.task.edit.TDeleteAlias
    • org.sigpath.task.edit.TDeleteExternalReference
    • org.sigpath.task.edit.TEditAlias
    • org.sigpath.task.edit.TEditExternalReference
    • org.sigpath.task.edit.TEditSigPathEntity
    • org.sigpath.task.xml.TExportBase
      • org.sigpath.task.xml.export.TExportChangeLog
      • org.sigpath.task.xml.export.TExportComplex
      • org.sigpath.task.xml.export.TExportComponents
      • org.sigpath.task.xml.export.TExportConcentrationMeasurement
      • org.sigpath.task.xml.export.TExportEnzymaticReaction
      • org.sigpath.task.xml.export.TExportKinetic
      • org.sigpath.task.xml.export.TExportKineticCustom
      • org.sigpath.task.xml.export.TExportLiteratureReference
      • org.sigpath.task.xml.export.TExportLiteratureReferences
      • org.sigpath.task.xml.export.TExportModel
      • org.sigpath.task.xml.TExportModels
      • org.sigpath.task.xml.export.TExportModifiedChemical
      • org.sigpath.task.xml.export.TExportNamedChemical
      • org.sigpath.task.xml.export.TExportNamedChemicalInteraction
      • org.sigpath.task.xml.export.TExportOrganism
      • org.sigpath.task.xml.export.TExportPathway
      • org.sigpath.task.xml.export.TExportPendingList
      • org.sigpath.task.xml.TExportPendingReviews
      • org.sigpath.task.xml.export.TExportProtein
      • org.sigpath.task.xml.export.TExportReaction
      • org.sigpath.task.xml.export.TExportReferences
      • org.sigpath.task.xml.export.TExportSmallMolecule
      • org.sigpath.task.xml.TExportStandaloneModel
      • org.sigpath.task.xml.export.TExportUserComment
    • org.sigpath.task.model.TExportModel
      • org.sigpath.task.model.TExportModelKK
      • org.sigpath.task.model.TSBMLModelExport
    • org.sigpath.task.model.TExportModelReactionsFromSpids
    • org.sigpath.task.edit.TExportModifiedEntities
    • org.sigpath.task.review.TGetAllPendingLists
    • org.sigpath.task.TGetChemical
    • org.sigpath.task.TGetConcentrations
    • org.sigpath.task.TGetConcentrationsByReaction
    • org.sigpath.task.TGetDBInfo
    • org.sigpath.task.util.TGetFilteredUnitsNames
    • org.sigpath.task.util.TGetKineticNames
    • org.sigpath.task.TGetModel
    • org.sigpath.task.model.TGetMoleculesFromReactions
    • org.sigpath.task.util.TGetOrganismNames
    • org.sigpath.task.TGetPathway
    • org.sigpath.task.review.TGetPendingList
    • org.sigpath.task.spid.TGetRemoteSpidRange
    • org.sigpath.task.TGetSigPathEntity
    • org.sigpath.task.TGetSpidByDbAc
    • org.sigpath.task.spid.TGetSpidRange
    • org.sigpath.task.TGetUsers
    • org.sigpath.task.util.TGetXMLBindingsFromKinetic
    • org.sigpath.task.util.TGetXMLKinetic
    • org.sigpath.task.xml.TImportBase
      • org.sigpath.task.xml.TSaveComponent
      • org.sigpath.task.xml.TSaveKineticInteractions
        • org.sigpath.task.xml.TSaveReactions
          • org.sigpath.task.xml.TSaveEnzymatic
            • org.sigpath.task.xml.TUpdateReactions
      • org.sigpath.task.xml.TSaveKinetics
      • org.sigpath.task.xml.TSaveModels
      • org.sigpath.task.xml.TSaveNamedChemicalInteractions
      • org.sigpath.task.xml.TSavePathways
    • org.sigpath.task.edit.TImportModifiedEntities
    • org.sigpath.task.util.TIndexModifiedChemicals
    • org.sigpath.task.TLinkComponentsToReactions
    • org.sigpath.task.spid.TMarkSpidRange
    • org.sigpath.task.TOrganismOptimizer
    • org.sigpath.task.axis.TPopulateBackwardReferences
    • org.sigpath.task.axis.TPopulateSigPathEntitySummary
    • org.sigpath.task.TRemoveConcentration
    • org.sigpath.task.TRemoveSigPathEntity
    • org.sigpath.task.xml.TSaveConcMeasurements
    • org.sigpath.task.xml.TSaveNamedChemicals
    • org.sigpath.task.xml.TSavePendingReviews
    • org.sigpath.task.xml.TSaveProteins
    • org.sigpath.task.xml.TSaveSmallMolecules
    • org.sigpath.task.TScanEnzReactionsAndReactions
    • org.sigpath.task.TSearchMolecules (implements org.sigpath.task.ITSearchTask)
    • org.sigpath.task.TSearchTask
      • org.sigpath.task.TSearchReactions (implements org.sigpath.task.ITSearchTask)
      • org.sigpath.task.TSearchReactionsByKeyword
      • org.sigpath.task.TSearchReactionsByPMID
      • org.sigpath.task.TSearchReactionsByUser
    • org.sigpath.task.review.TUpdatePendingList
    • org.sigpath.task.spid.TUpdateSpidRange
    • org.sigpath.task.xml.TValidateSPE
      • org.sigpath.task.xml.TValidateComponent
      • org.sigpath.task.xml.TValidateConcMeasurements
      • org.sigpath.task.xml.TValidateKineticInteractions
      • org.sigpath.task.xml.TValidateKinetics
      • org.sigpath.task.xml.TValidateModelCompartments
      • org.sigpath.task.xml.TValidateModelConcentrations
      • org.sigpath.task.xml.TValidateModelExcludedReactions
      • org.sigpath.task.xml.TValidateModelReactions
      • org.sigpath.task.xml.TValidateModels
      • org.sigpath.task.xml.TValidateNamedChemicalInteractions
      • org.sigpath.task.xml.TValidateNamedChemicals
      • org.sigpath.task.xml.TValidatePathways
      • org.sigpath.task.xml.TValidatePendingReviews
      • org.sigpath.task.xml.TValidateProteins
      • org.sigpath.task.xml.TValidateReactions
        • org.sigpath.task.xml.TValidateEnzymatic
      • org.sigpath.task.xml.TValidateSmallMolecules
    • org.sigpath.task.diagrams.TViewImage (implements java.awt.event.ActionListener)
    • org.sigpath.task.diagrams.TViewImageNone (implements org.sigpath.task.diagrams.GraphTechnology)
    • org.sigpath.task.diagrams.TViewImageYFiles (implements org.sigpath.task.diagrams.GraphTechnology)
  • y.view.DefaultGraph2DRenderer (implements y.view.Graph2DRenderer)
    • yext.svg.io.SVGGraph2DRenderer
      • yext.svg.io.SVGDOMEnhancer
        • org.sigpath.util.HttpLinksEnhancer
  • org.apache.tapestry.multipart.DefaultMultipartDecoder (implements org.apache.tapestry.multipart.IMultipartDecoder)
    • org.sigpath.tapestry.multipart.SigPathMultipartDecoder
  • javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
    • org.sigpath.navigator.components.NavigatorTreeNode
  • org.sigpath.bioimport.xml.DescriptionType (implements java.io.Serializable)
    • org.sigpath.bioimport.xml.Description (implements java.io.Serializable)
  • org.sigpath.bioimport.xml.DescriptionTypeItem (implements java.io.Serializable)
  • java.util.Dictionary<K,V>
    • java.util.Hashtable<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • java.util.Properties
        • org.sigpath.util.PropertyManager
  • org.sigpath.bioimport.DisplaySPSubmission
  • org.lsmp.djep.xjep.DoNothingVisitor (implements org.nfunk.jep.ParserVisitor)
    • org.sigpath.util.formula.SBMLSpeciesSubstituteVisitor
    • org.sigpath.util.formula.SigPathNodesGeneratorVisitor
    • org.sigpath.util.formula.SigPathSubstitutionVisitor
  • org.sigpath.database.EntityCollectionDataSource (implements org.sigpath.database.DataSource)
  • org.sigpath.database.EntityManager (implements org.sigpath.database.SigPathManager)
  • org.sigpath.tapestry.components.table.EntitySetPaged (implements org.apache.tapestry.contrib.table.model.IBasicTableModel)
  • org.sigpath.bioimport.xml.Entries (implements java.io.Serializable)
  • org.sigpath.bioimport.xml.EntryType (implements java.io.Serializable)
    • org.sigpath.bioimport.xml.Entry (implements java.io.Serializable)
  • org.sigpath.adapter.EnzymaticAdapterImpl (implements org.sigpath.adapter.EnzymaticAdapter)
  • org.sigpath.bioimport.reaction2.EnzymaticParameters (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.EnzymaticReaction (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Enzyme (implements java.io.Serializable)
  • org.sigpath.bioimport.xml.ErType (implements java.io.Serializable)
    • org.sigpath.bioimport.xml.Er (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.ExcludedReaction (implements java.io.Serializable)
  • org.sigpath.datamodel.models.ExcludedReaction
  • org.sigpath.tapestry.components.table.ExcludedReactionComparator (implements java.util.Comparator<T>)
  • org.sigpath.bioimport.reaction2.ExcludedReactions (implements java.io.Serializable)
  • org.sigpath.util.ExportModifiedEntities
  • org.sigpath.task.model.ExportWriter
    • org.sigpath.task.model.JSimWriter
    • org.sigpath.task.model.SBMLWriter
      • org.sigpath.task.model.SBMLL1V1Writer
      • org.sigpath.task.model.SBMLL1V2Writer
      • org.sigpath.task.model.SBMLL2Writer
  • org.sigpath.bioimport.reaction2.ExternalReference (implements java.io.Serializable)
  • org.sigpath.datamodel.ExternalReference
  • org.sigpath.datamodel.ExternalReferencesImpl (implements org.sigpath.datamodel.ExternalReferences, javax.jdo.InstanceCallbacks)
  • org.sigpath.bioimport.xml.ExternalReferencesType (implements java.io.Serializable)
    • org.sigpath.bioimport.xml.ExternalReferences (implements java.io.Serializable)
  • javax.swing.filechooser.FileFilter
    • org.sigpath.navigator.components.NavigatorFileFilter
  • org.sigpath.task.util.Filter
    • org.sigpath.task.util.FilterKinetics
    • org.sigpath.task.util.FilterUnitType
  • org.sigpath.util.FilteringIterator (implements java.util.Iterator<E>)
  • org.sigpath.util.xml.FixEnzLitRefs
  • org.sigpath.bioimport.reaction2.Formula (implements java.io.Serializable)
  • org.sigpath.fulltext.FTSManagerMeasurements
  • org.sigpath.bioimport.FullTextIndexer
  • org.sigpath.bioimport.FullTextSearchIndexer
  • org.sigpath.fulltext.FullTextSearchManager (implements org.sigpath.database.SigPathManager)
    • org.sigpath.fulltext.JdoFullTextSearchManager
    • org.sigpath.fulltext.LuceneFullTextSearchManager
    • org.sigpath.fulltext.OracleFullTextSearchManager
  • org.sigpath.axis.generator.ws.GeneratorSoapBindingImpl (implements org.sigpath.axis.generator.ws.IdentifierGenerator)
  • javax.servlet.GenericServlet (implements java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig)
    • javax.servlet.http.HttpServlet (implements java.io.Serializable)
      • org.apache.struts.action.ActionServlet
        • org.sigpath.action.SigPathServlet
  • org.sigpath.bioimport.GenewaysSBMLImport
  • org.sigpath.util.GlobalForwards
  • org.sigpath.navigator.controllers.GraphicsViewController (implements org.sigpath.navigator.controllers.MainViewController)
  • org.sigpath.util.HashKey
  • org.sigpath.axis.generator.IdentifierGeneratorImpl (implements org.sigpath.axis.generator.IdentifierGenerator, org.sigpath.database.SigPathManager)
  • org.sigpath.bioimport.IdRefPostProcessingAction
  • org.sigpath.util.ImportModifiedEntities
  • org.sigpath.bioimport.reaction2.InContactWith (implements java.io.Serializable)
  • java.io.InputStream (implements java.io.Closeable)
    • java.io.FilterInputStream
      • org.sigpath.util.Base64.InputStream
  • org.sigpath.bioimport.reaction2.InteractionRef (implements java.io.Serializable)
  • org.sigpath.datamodel.InteractionSitesImpl (implements org.sigpath.datamodel.InteractionSites)
  • org.sigpath.bioimport.reaction2.InternalLinks (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.InvolvedInReaction (implements java.io.Serializable)
  • org.sigpath.database.JDOResultCollection (implements java.util.Collection<E>)
  • org.sigpath.database.JDOResultIterator (implements java.util.Iterator<E>)
  • org.sigpath.database.JDORICreateDataStore
  • org.nfunk.jep.JEP
    • org.lsmp.djep.xjep.XJep
      • org.sigpath.util.formula.SigpathJep
        • org.sigpath.util.formula.Formula
  • org.sigpath.bioimport.reaction2.KBackward (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.KBKP (implements java.io.Serializable)
  • org.sigpath.datamodel.keywords.KeywordInvertedIndex (implements javax.jdo.InstanceCallbacks)
  • org.sigpath.bioimport.reaction2.KForward (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Kinetic (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.KineticBindings (implements java.io.Serializable)
  • org.sigpath.tapestry.util.KineticNamesModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.bioimport.reaction2.KineticRef (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Kinetics (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.types.KineticTypeType (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.KMichaelis (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Kp (implements java.io.Serializable)
  • org.sigpath.datamodel.lset.LargeSetOfObject (implements java.util.Collection<E>, javax.jdo.InstanceCallbacks)
    • org.sigpath.datamodel.lset.LargeSetOfKeyword
    • org.sigpath.datamodel.lset.LargeSetOfSigPathEntity
  • org.sigpath.bioimport.reaction2.Left (implements java.io.Serializable)
  • org.sigpath.bioimport.sbml.ListOfRulesItem (implements java.io.Serializable)
  • org.sigpath.datamodel.LiteratureReferenceImpl (implements org.sigpath.datamodel.LiteratureReference)
  • org.sigpath.datamodel.LiteratureReferenceImplNonJdo (implements org.sigpath.datamodel.LiteratureReference, java.io.Serializable)
  • org.sigpath.datamodel.LiteratureReferencesImpl (implements javax.jdo.InstanceCallbacks, org.sigpath.datamodel.LiteratureReferences)
  • org.sigpath.datamodel.models.LocalConcentration
  • org.sigpath.bioimport.reaction2.Location (implements java.io.Serializable)
  • org.sigpath.axis.navigatorcastor.ws.LoginInfo (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Model (implements java.io.Serializable)
  • org.sigpath.model.Model
  • org.sigpath.model.Model_Chemical
  • org.sigpath.model.Model_Compartment
  • org.sigpath.model.Model_LocalConcentration
  • org.sigpath.bioimport.reaction2.ModelCompartments (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.ModelConcentration (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.ModelReaction (implements java.io.Serializable)
  • org.sigpath.tapestry.components.table.ModelReactionComparator (implements java.util.Comparator<T>)
  • org.sigpath.tapestry.util.ModelReactionsModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.datamodel.modifications.ModificationInfo
    • org.sigpath.datamodel.modifications.BecomesInfo
    • org.sigpath.datamodel.modifications.ComesFromInfo
  • org.sigpath.bioimport.reaction2.ModifiedChemical (implements java.io.Serializable)
  • org.sigpath.datamodel.ModifiedEntityList
  • org.sigpath.bioimport.reaction2.Modifiers (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Molecule (implements java.io.Serializable)
  • org.sigpath.datamodel.models.Molecule
  • org.sigpath.task.model.MoleculeComparator (implements java.util.Comparator<T>)
  • org.sigpath.bioimport.reaction2.MoleculeConcentration (implements java.io.Serializable)
  • org.sigpath.adapter.MoleculeDisplayImpl (implements org.sigpath.adapter.MoleculeDisplay)
  • org.sigpath.bioimport.reaction2.MoleculeExcluded (implements java.io.Serializable)
  • org.sigpath.datamodel.models.MoleculeRef
  • org.sigpath.task.model.MoleculeRefComparator (implements java.util.Comparator<T>)
  • org.sigpath.tapestry.util.MoleculesModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.tapestry.util.MoleculeTypeModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • java.awt.event.MouseAdapter (implements java.awt.event.MouseListener)
    • org.sigpath.navigator.controllers.TreeViewController
  • org.sigpath.bioimport.reaction2.NamedChemical (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.NamedChemicalInteraction (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.NamedChemicalInteractions (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.NamedChemicalRef (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.NamedChemicals (implements java.io.Serializable)
  • org.sigpath.datamodel.naming.NamedObject
  • org.sigpath.database.NamingManager (implements org.sigpath.database.SigPathManager)
  • org.sigpath.axis.navigatorcastor.ws.NavigatorcastorSoapBindingImpl (implements org.sigpath.axis.navigatorcastor.ws.SigPathCastor)
  • org.sigpath.navigator.util.NavigatorConstants
  • org.sigpath.navigator.memorystore.NavigatorEntityManager
  • org.sigpath.datamodel.NavigatorFactoryImpl (implements org.sigpath.datamodel.SigPathFactory)
  • org.sigpath.navigator.memorystore.NavigatorMemoryManager
  • org.sigpath.navigator.util.NavigatorMisc
  • org.sigpath.axis.navigator.ws.NavigatorSoapBindingImpl (implements org.sigpath.axis.navigator.ws.SigPath)
  • org.sigpath.navigator.memorystore.NavigatorXMLExport
  • org.sigpath.navigator.memorystore.NavigatorXMLImport
  • org.sigpath.navigator.mapping.NilMapping (implements org.sigpath.navigator.mapping.MappingStrategy)
  • org.lsmp.djep.xjep.NodeFactory
    • org.sigpath.util.formula.SigpathNodeFactory
  • org.sigpath.navigator.util.NodeManager
  • org.sigpath.bioimport.sbml.Notes (implements java.io.Serializable)
  • java.util.Observable
    • org.sigpath.navigator.models.DeleteModel
    • org.sigpath.navigator.models.EditPathwayModel
    • org.sigpath.navigator.models.GraphicsModel
    • org.sigpath.navigator.models.LoginModel
    • org.sigpath.navigator.models.TreeNodeModel
  • org.sigpath.bioimport.reaction2.OnLeft (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.OnRight (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Organism (implements java.io.Serializable)
  • org.sigpath.datamodel.OrganismImpl (implements javax.jdo.InstanceCallbacks, org.sigpath.datamodel.Organism)
  • org.sigpath.tapestry.util.OrganismModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.bioimport.xml.OrganismType (implements java.io.Serializable)
    • org.sigpath.bioimport.xml.Organism (implements java.io.Serializable)
  • java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
    • java.io.FilterOutputStream
      • org.sigpath.util.Base64.OutputStream
  • org.sigpath.model.PagedList (implements org.sigpath.model.PagedCollection)
  • org.sigpath.tapestry.util.PageManager
  • org.sigpath.bioimport.reaction2.Parameter (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.ParameterBinding (implements java.io.Serializable)
  • org.sigpath.datamodel.ParameterImpl (implements org.sigpath.datamodel.Parameter)
  • org.sigpath.bioimport.reaction2.Parameters (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.ParametersBindingsDeclaration (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Pathway (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.PathwayReaction (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Pending_item (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Pending_list (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Pending_reviews (implements java.io.Serializable)
  • org.sigpath.datamodel.reviews.PendingItemImpl (implements org.sigpath.datamodel.reviews.PendingItem)
  • org.sigpath.util.PLong
  • org.sigpath.tapestry.components.PopupLinkRenderer (implements org.apache.tapestry.link.ILinkRenderer)
  • org.sigpath.bioimport.reaction2.PreviousVersion (implements java.io.Serializable)
  • org.sigpath.util.ProgressListener
  • org.sigpath.bioimport.reaction2.Protein (implements java.io.Serializable)
  • org.sigpath.bioimport.ProteinImport
  • org.sigpath.bioimport.reaction2.Proteins (implements java.io.Serializable)
  • org.sigpath.tapestry.pages.PublicationCallback
  • org.sigpath.bioimport.reaction2.Publications (implements java.io.Serializable)
  • org.sigpath.reference.PubMedInfoImpl (implements org.sigpath.reference.PubMedInfo)
  • org.sigpath.database.PureJdoExtension (implements org.sigpath.database.JdoExtension)
    • org.sigpath.database.FOJdoExtension
    • org.sigpath.database.KODOJdoExtension
  • org.sigpath.datamodel.Query
  • org.sigpath.database.QueryManager (implements org.sigpath.database.SigPathManager)
  • org.sigpath.bioimport.reaction2.Reaction (implements java.io.Serializable)
  • org.sigpath.adapter.ReactionAdapterImpl (implements org.sigpath.adapter.ReactionAdapter)
  • org.sigpath.tapestry.util.ReactionTypeModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.database.ReactionTyper
  • org.sigpath.util.ReactionUtil
  • org.sigpath.datamodel.ReadOnlyIterator (implements java.util.Iterator<E>)
  • org.sigpath.bioimport.reaction2.Ref (implements java.io.Serializable)
  • org.sigpath.datamodel.ResidueRangeImpl (implements org.sigpath.datamodel.ResidueRange)
  • org.sigpath.bioimport.reaction2.Review (implements java.io.Serializable)
  • org.sigpath.datamodel.reviews.Review (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Reviews (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Right (implements java.io.Serializable)
  • org.sigpath.bioimport.sbml.SBase (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.Compartment (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.Event (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.EventAssignment (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.FunctionDefinition (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.KineticLaw (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.ListOfCompartments (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.ListOfEventAssignments (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.ListOfEvents (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.ListOfFunctionDefinitions (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.ListOfModifierSpeciesReferences (implements java.io.Serializable)
      • org.sigpath.bioimport.sbml.ListOfModifiers (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.ListOfParameters (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.ListOfReactions (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.ListOfRules (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.ListOfSpecies (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.ListOfSpeciesReferences (implements java.io.Serializable)
      • org.sigpath.bioimport.sbml.ListOfProducts (implements java.io.Serializable)
      • org.sigpath.bioimport.sbml.ListOfReactants (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.ListOfUnitDefinitions (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.ListOfUnits (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.MathField (implements java.io.Serializable)
      • org.sigpath.bioimport.sbml.Delay (implements java.io.Serializable)
      • org.sigpath.bioimport.sbml.Trigger (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.Model (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.Parameter (implements java.io.Serializable)
      • org.sigpath.bioimport.sbml._parameter (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.Reaction (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.Rule (implements java.io.Serializable)
      • org.sigpath.bioimport.sbml.AlgebraicRule (implements java.io.Serializable)
      • org.sigpath.bioimport.sbml.AssignmentRule (implements java.io.Serializable)
      • org.sigpath.bioimport.sbml.RateRule (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.Sbml (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.SimpleSpeciesReference (implements java.io.Serializable)
      • org.sigpath.bioimport.sbml.ModifierSpeciesReference (implements java.io.Serializable)
      • org.sigpath.bioimport.sbml.SpeciesReference (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.Species (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.StoichiometryMath (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.Unit (implements java.io.Serializable)
    • org.sigpath.bioimport.sbml.UnitDefinition (implements java.io.Serializable)
  • org.sigpath.task.model.SBMLEntity
    • org.sigpath.task.model.SBMLCompartment
    • org.sigpath.task.model.SBMLReaction
    • org.sigpath.task.model.SBMLSpecies
  • org.sigpath.task.model.SBMLEntityComparator (implements java.util.Comparator<T>)
  • org.sigpath.task.model.SBMLReactionComparator (implements java.util.Comparator<T>)
  • org.sigpath.bioimport.Search
  • org.sigpath.tapestry.components.table.SearchResultsSetPaged (implements org.apache.tapestry.contrib.table.model.IBasicTableModel)
  • org.apache.axis.client.Service (implements javax.naming.Referenceable, java.io.Serializable, javax.xml.rpc.Service)
    • org.sigpath.axis.generator.ws.IdentifierGeneratorServiceLocator (implements org.sigpath.axis.generator.ws.IdentifierGeneratorService)
    • org.sigpath.axis.navigatorcastor.ws.SigPathCastorServiceLocator (implements org.sigpath.axis.navigatorcastor.ws.SigPathCastorService)
    • org.sigpath.axis.navigator.ws.SigPathServiceLocator (implements org.sigpath.axis.navigator.ws.SigPathService)
  • org.sigpath.datamodel.kinetic.SigPathBindingFactory
  • org.sigpath.axis.navigatorcastor.SigPathCastorImpl (implements org.sigpath.axis.navigatorcastor.SigPathCastor)
  • org.sigpath.util.SigPathConstants
  • org.sigpath.model.SigPathEntityBean (implements java.io.Serializable)
  • org.sigpath.tapestry.components.table.SigPathEntityBeanComparator (implements java.util.Comparator<T>)
  • org.sigpath.task.model.SigPathEntityComparator (implements java.util.Comparator<T>)
  • org.sigpath.axis.navigator.ws.SigPathEntitySummary (implements java.io.Serializable)
  • org.sigpath.model.SigPathEntityTableRow (implements java.io.Serializable)
  • org.sigpath.datamodel.SigPathFactoryImpl (implements org.sigpath.datamodel.SigPathFactory)
  • org.sigpath.axis.navigator.SigPathImpl (implements org.sigpath.axis.navigator.SigPath)
  • org.sigpath.navigator.SigPathNavigator
  • org.sigpath.bioimport.reaction2.SigpathSubmission (implements java.io.Serializable)
  • org.sigpath.util.xml.SigPathSubmissionDifferenceListener (implements org.custommonkey.xmlunit.DifferenceListener)
  • org.sigpath.util.SigPathTimer
  • org.nfunk.jep.SimpleNode (implements org.nfunk.jep.Node)
    • org.nfunk.jep.ASTVarNode
      • org.sigpath.util.formula.ASTSigPathVarNode
        • org.sigpath.util.formula.ASTChemicalVarNode
        • org.sigpath.util.formula.ASTCompartmentVarNode
        • org.sigpath.util.formula.ASTSBMLVarNode
  • org.sigpath.database.SimpleSPIDManager (implements org.sigpath.database.SPIDManager)
  • org.sigpath.bioimport.reaction2.SmallMolecule (implements java.io.Serializable)
  • org.sigpath.bioimport.SmallMoleculeImport
  • org.sigpath.bioimport.SmallMoleculeImporter
  • org.sigpath.bioimport.reaction2.SmallMolecules (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.Source (implements java.io.Serializable)
  • org.sigpath.database.SPDBManager (implements org.sigpath.database.SigPathManager, org.sigpath.database.TransactionManager)
  • org.sigpath.bioimport.reaction2.SpeciesBinding (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.SpeciesBindingsDeclaration (implements java.io.Serializable)
  • org.sigpath.admin.SpidChooser
  • org.sigpath.database.SpidCollectionDataSource (implements org.sigpath.database.DataSource)
  • org.sigpath.database.SPIDManagerImpl (implements org.sigpath.database.SPIDManager)
  • org.sigpath.database.SpidManagerWithSpidRanges (implements org.sigpath.database.SigPathManager, org.sigpath.database.SPIDManager)
  • org.sigpath.axis.generator.ws.SpidRange (implements java.io.Serializable)
  • org.sigpath.datamodel.SpidRange
  • org.sigpath.database.StandaloneDataSource (implements org.sigpath.database.DataSource)
  • org.sigpath.tapestry.util.StringFormatting
  • org.apache.axis.client.Stub (implements javax.xml.rpc.Stub)
    • org.sigpath.axis.generator.ws.GeneratorSoapBindingStub (implements org.sigpath.axis.generator.ws.IdentifierGenerator)
    • org.sigpath.axis.navigatorcastor.ws.NavigatorcastorSoapBindingStub (implements org.sigpath.axis.navigatorcastor.ws.SigPathCastor)
    • org.sigpath.axis.navigator.ws.NavigatorSoapBindingStub (implements org.sigpath.axis.navigator.ws.SigPath)
  • org.sigpath.bioimport.geneways.SubstanceType (implements java.io.Serializable)
    • org.sigpath.bioimport.geneways.Substance (implements java.io.Serializable)
  • org.sigpath.admin.SwingWorker
    • org.sigpath.admin.WorkerRoot
      • org.sigpath.admin.LongTermTask
      • org.sigpath.admin.TaskBySpidWorker
        • org.sigpath.admin.ExportSBMLBySpidWorker
        • org.sigpath.admin.XMLExportBySpidWorker
      • org.sigpath.admin.XMLExportWorker
      • org.sigpath.admin.XMLImportWorker
  • org.sigpath.admin.SwitchDB (implements java.awt.event.ActionListener)
  • org.sigpath.datamodel.kinetic.SymbolBinding
    • org.sigpath.datamodel.kinetic.BindingDeclaration
    • org.sigpath.datamodel.kinetic.BindingDefinition
      • org.sigpath.datamodel.kinetic.BindingChemicalImpl
      • org.sigpath.datamodel.kinetic.BindingParameterImpl
  • javax.servlet.jsp.tagext.TagSupport (implements javax.servlet.jsp.tagext.IterationTag, java.io.Serializable)
    • javax.servlet.jsp.tagext.BodyTagSupport (implements javax.servlet.jsp.tagext.BodyTag)
      • org.sigpath.taglib.NumberFormat
      • org.sigpath.taglib.OutputField
      • org.sigpath.taglib.PageHeader
      • org.sigpath.taglib.PubMedTag
    • org.sigpath.taglib.SchemaTag
      • org.sigpath.taglib.DisplaySchemaTag
  • org.sigpath.bioimport.reaction2.TargetUnit (implements java.io.Serializable)
  • org.sigpath.task.review.TCoreTasks
  • org.sigpath.task.xml.TCoreTasks
  • org.sigpath.task.xml.TCoreValidate
  • org.sigpath.model.TempReaction
  • org.sigpath.task.model.TempReactionComparator (implements java.util.Comparator<T>)
  • org.sigpath.task.xml.export.TExportChemical
  • org.sigpath.task.axis.TGetWebServiceSpidRange
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.sigpath.database.SigPathDatabaseException
      • org.sigpath.util.formula.SigPathKineticException
  • org.sigpath.adapter.TissueAdapter
  • org.apache.lucene.analysis.TokenStream
    • org.apache.lucene.analysis.Tokenizer
      • org.sigpath.fulltext.SigPathTokenizer
  • org.sigpath.adapter.TransientParameter (implements org.sigpath.datamodel.Parameter)
  • org.sigpath.task.navigator.TSaveBase
    • org.sigpath.task.navigator.save.TSaveChange_log
    • org.sigpath.task.navigator.save.TSaveComplex
    • org.sigpath.task.navigator.save.TSaveConcentrationMeasurement
    • org.sigpath.task.navigator.save.TSaveCustomKinetic
    • org.sigpath.task.navigator.save.TSaveEnzymaticReaction
    • org.sigpath.task.navigator.save.TSaveKinetic
    • org.sigpath.task.navigator.save.TSaveModel
    • org.sigpath.task.navigator.save.TSaveModifiedChemical
    • org.sigpath.task.navigator.save.TSaveNamedChemical
    • org.sigpath.task.navigator.save.TSaveNamedChemicalInteraction
    • org.sigpath.task.navigator.save.TSaveOrganism
    • org.sigpath.task.navigator.save.TSavePathway
    • org.sigpath.task.navigator.save.TSavePending_list
    • org.sigpath.task.navigator.save.TSaveProtein
    • org.sigpath.task.navigator.save.TSaveReaction
    • org.sigpath.task.navigator.save.TSaveRef
    • org.sigpath.task.navigator.save.TSaveSmallMolecule
    • org.sigpath.task.navigator.save.TSaveUserComment
  • org.sigpath.task.navigator.TSaveToDeleteLog
  • org.sigpath.bioimport.reaction2.types.TypeType (implements java.io.Serializable)
  • org.sigpath.util.UIConstants
  • org.sigpath.action.UIHelper
  • org.sigpath.datamodel.Unit
  • org.sigpath.datamodel.UnitCoefficients
  • org.sigpath.bioimport.sbml.types.UnitKind (implements java.io.Serializable)
  • org.sigpath.database.UnitManager (implements org.sigpath.database.SigPathManager)
  • org.sigpath.tapestry.util.UnitModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.database.Units
  • org.sigpath.bioimport.reaction2.types.UnitType (implements java.io.Serializable)
  • org.sigpath.user.User (implements javax.jdo.InstanceCallbacks)
  • org.sigpath.bioimport.reaction2.UserComment (implements java.io.Serializable)
  • org.sigpath.datamodel.UserComment (implements java.io.Serializable)
  • org.sigpath.tapestry.pages.UserCommentCallback
  • org.sigpath.bioimport.reaction2.UserComments (implements java.io.Serializable)
  • org.sigpath.database.UserManager (implements org.sigpath.database.SigPathManager)
  • org.sigpath.tapestry.util.UserNameModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.adapter.ValidationErrors
  • org.exolab.castor.xml.Validator (implements org.exolab.castor.xml.ClassValidator)
    • org.exolab.castor.xml.util.XMLClassDescriptorImpl (implements org.exolab.castor.xml.XMLClassDescriptor)
      • org.sigpath.bioimport.geneways.ActionTypeDescriptor
        • org.sigpath.bioimport.geneways.ActionDescriptor
      • org.sigpath.bioimport.xml.AliasesTypeDescriptor
        • org.sigpath.bioimport.xml.AliasesDescriptor
      • org.sigpath.bioimport.reaction2.BindingDeclarationDescriptor
      • org.sigpath.bioimport.reaction2.Change_logDescriptor
      • org.sigpath.bioimport.reaction2.CompartmentDescriptor
      • org.sigpath.bioimport.reaction2.ComplexDescriptor
      • org.sigpath.bioimport.reaction2.ComponentsDescriptor
      • org.sigpath.bioimport.reaction2.Concentration_measurementDescriptor
      • org.sigpath.bioimport.reaction2.Concentration_measurementsDescriptor
      • org.sigpath.bioimport.reaction2.CustomKineticDescriptor
      • org.sigpath.bioimport.xml.DescriptionTypeDescriptor
        • org.sigpath.bioimport.xml.DescriptionDescriptor
      • org.sigpath.bioimport.xml.DescriptionTypeItemDescriptor
      • org.sigpath.bioimport.xml.EntriesDescriptor
      • org.sigpath.bioimport.xml.EntryTypeDescriptor
        • org.sigpath.bioimport.xml.EntryDescriptor
      • org.sigpath.bioimport.reaction2.EnzymaticParametersDescriptor
      • org.sigpath.bioimport.reaction2.EnzymaticReactionDescriptor
      • org.sigpath.bioimport.reaction2.EnzymeDescriptor
      • org.sigpath.bioimport.xml.ErTypeDescriptor
        • org.sigpath.bioimport.xml.ErDescriptor
      • org.sigpath.bioimport.reaction2.ExcludedReactionDescriptor
      • org.sigpath.bioimport.reaction2.ExcludedReactionsDescriptor
      • org.sigpath.bioimport.reaction2.ExternalReferenceDescriptor
      • org.sigpath.bioimport.xml.ExternalReferencesTypeDescriptor
        • org.sigpath.bioimport.xml.ExternalReferencesDescriptor
      • org.sigpath.bioimport.reaction2.FormulaDescriptor
      • org.sigpath.bioimport.reaction2.InContactWithDescriptor
      • org.sigpath.bioimport.reaction2.InteractionRefDescriptor
      • org.sigpath.bioimport.reaction2.InternalLinksDescriptor
      • org.sigpath.bioimport.reaction2.InvolvedInReactionDescriptor
      • org.sigpath.bioimport.reaction2.KBackwardDescriptor
      • org.sigpath.bioimport.reaction2.KBKPDescriptor
      • org.sigpath.bioimport.reaction2.KForwardDescriptor
      • org.sigpath.bioimport.reaction2.KineticBindingsDescriptor
      • org.sigpath.bioimport.reaction2.KineticDescriptor
      • org.sigpath.bioimport.reaction2.KineticRefDescriptor
      • org.sigpath.bioimport.reaction2.KineticsDescriptor
      • org.sigpath.bioimport.reaction2.types.KineticTypeTypeDescriptor
      • org.sigpath.bioimport.reaction2.KMichaelisDescriptor
      • org.sigpath.bioimport.reaction2.KpDescriptor
      • org.sigpath.bioimport.reaction2.LeftDescriptor
      • org.sigpath.bioimport.reaction2.LocationDescriptor
      • org.sigpath.bioimport.reaction2.ModelCompartmentsDescriptor
      • org.sigpath.bioimport.reaction2.ModelConcentrationDescriptor
      • org.sigpath.bioimport.reaction2.ModelDescriptor
      • org.sigpath.bioimport.reaction2.ModelReactionDescriptor
      • org.sigpath.bioimport.reaction2.ModifiedChemicalDescriptor
      • org.sigpath.bioimport.reaction2.ModifiersDescriptor
      • org.sigpath.bioimport.reaction2.MoleculeConcentrationDescriptor
      • org.sigpath.bioimport.reaction2.MoleculeDescriptor
      • org.sigpath.bioimport.reaction2.MoleculeExcludedDescriptor
      • org.sigpath.bioimport.reaction2.NamedChemicalDescriptor
      • org.sigpath.bioimport.reaction2.NamedChemicalInteractionDescriptor
      • org.sigpath.bioimport.reaction2.NamedChemicalInteractionsDescriptor
      • org.sigpath.bioimport.reaction2.NamedChemicalRefDescriptor
      • org.sigpath.bioimport.reaction2.NamedChemicalsDescriptor
      • org.sigpath.bioimport.reaction2.OnLeftDescriptor
      • org.sigpath.bioimport.reaction2.OnRightDescriptor
      • org.sigpath.bioimport.reaction2.OrganismDescriptor
      • org.sigpath.bioimport.xml.OrganismTypeDescriptor
        • org.sigpath.bioimport.xml.OrganismDescriptor
      • org.sigpath.bioimport.reaction2.ParameterBindingDescriptor
      • org.sigpath.bioimport.reaction2.ParameterDescriptor
      • org.sigpath.bioimport.reaction2.ParametersBindingsDeclarationDescriptor
      • org.sigpath.bioimport.reaction2.ParametersDescriptor
      • org.sigpath.bioimport.reaction2.PathwayDescriptor
      • org.sigpath.bioimport.reaction2.PathwayReactionDescriptor
      • org.sigpath.bioimport.reaction2.Pending_itemDescriptor
      • org.sigpath.bioimport.reaction2.Pending_listDescriptor
      • org.sigpath.bioimport.reaction2.Pending_reviewsDescriptor
      • org.sigpath.bioimport.reaction2.PreviousVersionDescriptor
      • org.sigpath.bioimport.reaction2.ProteinDescriptor
      • org.sigpath.bioimport.reaction2.ProteinsDescriptor
      • org.sigpath.bioimport.reaction2.PublicationsDescriptor
      • org.sigpath.bioimport.reaction2.ReactionDescriptor
      • org.sigpath.bioimport.reaction2.RefDescriptor
      • org.sigpath.bioimport.reaction2.ReviewDescriptor
      • org.sigpath.bioimport.reaction2.ReviewsDescriptor
      • org.sigpath.bioimport.reaction2.RightDescriptor
      • org.sigpath.bioimport.reaction2.SigpathSubmissionDescriptor
      • org.sigpath.bioimport.reaction2.SmallMoleculeDescriptor
      • org.sigpath.bioimport.reaction2.SmallMoleculesDescriptor
      • org.sigpath.bioimport.reaction2.SourceDescriptor
      • org.sigpath.bioimport.reaction2.SpeciesBindingDescriptor
      • org.sigpath.bioimport.reaction2.SpeciesBindingsDeclarationDescriptor
      • org.sigpath.bioimport.geneways.SubstanceTypeDescriptor
        • org.sigpath.bioimport.geneways.SubstanceDescriptor
      • org.sigpath.bioimport.reaction2.TargetUnitDescriptor
      • org.sigpath.bioimport.reaction2.types.TypeTypeDescriptor
      • org.sigpath.bioimport.reaction2.types.UnitTypeDescriptor
      • org.sigpath.bioimport.reaction2.UserCommentDescriptor
      • org.sigpath.bioimport.reaction2.UserCommentsDescriptor
      • org.sigpath.bioimport.reaction2.VMax_EnzymeConcentrationDescriptor
      • org.sigpath.bioimport.reaction2.VMaxDescriptor
  • org.sigpath.navigator.mapping.VerboseReactionNodesMapping (implements org.sigpath.navigator.mapping.MappingStrategy)
  • y.view.ViewMode (implements javax.swing.event.MouseInputListener)
    • y.view.EditMode
      • org.sigpath.navigator.components.NavigatorEditMode
    • y.view.PopupMode
      • org.sigpath.navigator.components.NavigatorPopupMode
  • org.sigpath.tapestry.pages.model.ViewXML
  • org.sigpath.tapestry.Visit (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.VMax (implements java.io.Serializable)
  • org.sigpath.bioimport.reaction2.VMax_EnzymeConcentration (implements java.io.Serializable)
  • org.sigpath.tapestry.util.VolumeUnitModel (implements org.apache.tapestry.form.IPropertySelectionModel)
  • org.sigpath.task.navigator.export.WizcodeTypeConverter
  • org.sigpath.task.navigator.save.WizcodeTypeConverter
  • org.sigpath.task.xml.export.WizcodeTypeConverter
  • org.sigpath.model.XDebug (implements java.io.Serializable)
  • org.sigpath.model.XDebugMessage (implements java.io.Serializable)
  • org.sigpath.model.XDebugParameter (implements java.io.Serializable)
  • org.sigpath.tapestry.model.XMLExcludedReactionFacade (implements java.io.Serializable)
  • org.sigpath.bioimport.XMLExport
  • org.sigpath.bioimport.XMLImport
  • org.sigpath.tapestry.model.XMLModelCompartmentFacade (implements java.io.Serializable)
  • org.sigpath.tapestry.model.XMLModelConcentrationFacade (implements java.io.Serializable)
  • org.sigpath.tapestry.model.XMLModelFacade (implements java.io.Serializable)
  • org.sigpath.tapestry.model.XMLMoleculeComparator (implements java.util.Comparator<T>)
  • org.sigpath.util.xml.XMLSubmissionSorter
  • org.sigpath.util.XMLValidator

Interface Hierarchy

• org.sigpath.datamodel.ActivityMapping
• org.sigpath.datamodel.lset.Collectable
  • org.sigpath.datamodel.BioPolymer
    • org.sigpath.datamodel.DNA
    • org.sigpath.datamodel.Protein
    • org.sigpath.datamodel.RNA
  • org.sigpath.datamodel.Chemical
    • org.sigpath.datamodel.BioPolymer
      • org.sigpath.datamodel.DNA
      • org.sigpath.datamodel.Protein
      • org.sigpath.datamodel.RNA
    • org.sigpath.datamodel.Complex
    • org.sigpath.datamodel.DNA
    • org.sigpath.datamodel.MacroMolecule
      • org.sigpath.datamodel.BioPolymer
        • org.sigpath.datamodel.DNA
        • org.sigpath.datamodel.Protein
        • org.sigpath.datamodel.RNA
      • org.sigpath.datamodel.Complex
      • org.sigpath.datamodel.DNA
      • org.sigpath.datamodel.Protein
      • org.sigpath.datamodel.RNA
    • org.sigpath.datamodel.Protein
    • org.sigpath.datamodel.RNA
    • org.sigpath.datamodel.SmallMolecule
  • org.sigpath.datamodel.Complex
  • org.sigpath.datamodel.ConcentrationMeasurement
  • org.sigpath.datamodel.DNA
  • org.sigpath.datamodel.EnzymaticReaction
  • org.sigpath.datamodel.Interaction
    • org.sigpath.datamodel.EnzymaticReaction
    • org.sigpath.datamodel.KineticInteraction
      • org.sigpath.datamodel.EnzymaticReaction
      • org.sigpath.datamodel.Reaction
    • org.sigpath.datamodel.Reaction
  • org.sigpath.datamodel.KineticInteraction
    • org.sigpath.datamodel.EnzymaticReaction
    • org.sigpath.datamodel.Reaction
  • org.sigpath.datamodel.MacroMolecule
    • org.sigpath.datamodel.BioPolymer
      • org.sigpath.datamodel.DNA
      • org.sigpath.datamodel.Protein
      • org.sigpath.datamodel.RNA
    • org.sigpath.datamodel.Complex
    • org.sigpath.datamodel.DNA
    • org.sigpath.datamodel.Protein
    • org.sigpath.datamodel.RNA
  • org.sigpath.datamodel.reviews.PendingList
  • org.sigpath.datamodel.Protein
  • org.sigpath.datamodel.Reaction
  • org.sigpath.datamodel.RNA
  • org.sigpath.datamodel.SigPathEntity
    • org.sigpath.datamodel.BioPolymer
      • org.sigpath.datamodel.DNA
      • org.sigpath.datamodel.Protein
      • org.sigpath.datamodel.RNA
    • org.sigpath.datamodel.Chemical
      • org.sigpath.datamodel.BioPolymer
        • org.sigpath.datamodel.DNA
        • org.sigpath.datamodel.Protein
        • org.sigpath.datamodel.RNA
      • org.sigpath.datamodel.Complex
      • org.sigpath.datamodel.DNA
      • org.sigpath.datamodel.MacroMolecule
        • org.sigpath.datamodel.BioPolymer
          • org.sigpath.datamodel.DNA
          • org.sigpath.datamodel.Protein
          • org.sigpath.datamodel.RNA
        • org.sigpath.datamodel.Complex
        • org.sigpath.datamodel.DNA
        • org.sigpath.datamodel.Protein
        • org.sigpath.datamodel.RNA
      • org.sigpath.datamodel.Protein
      • org.sigpath.datamodel.RNA
      • org.sigpath.datamodel.SmallMolecule
    • org.sigpath.datamodel.Complex
    • org.sigpath.datamodel.ConcentrationMeasurement
    • org.sigpath.datamodel.DNA
    • org.sigpath.datamodel.EnzymaticReaction
    • org.sigpath.datamodel.Interaction
      • org.sigpath.datamodel.EnzymaticReaction
      • org.sigpath.datamodel.KineticInteraction
        • org.sigpath.datamodel.EnzymaticReaction
        • org.sigpath.datamodel.Reaction
      • org.sigpath.datamodel.Reaction
    • org.sigpath.datamodel.KineticInteraction
      • org.sigpath.datamodel.EnzymaticReaction
      • org.sigpath.datamodel.Reaction
    • org.sigpath.datamodel.MacroMolecule
      • org.sigpath.datamodel.BioPolymer
        • org.sigpath.datamodel.DNA
        • org.sigpath.datamodel.Protein
        • org.sigpath.datamodel.RNA
      • org.sigpath.datamodel.Complex
      • org.sigpath.datamodel.DNA
      • org.sigpath.datamodel.Protein
      • org.sigpath.datamodel.RNA
    • org.sigpath.datamodel.reviews.PendingList
    • org.sigpath.datamodel.Protein
    • org.sigpath.datamodel.Reaction
    • org.sigpath.datamodel.RNA
    • org.sigpath.datamodel.SmallMolecule
  • org.sigpath.datamodel.SmallMolecule
• org.sigpath.database.DataSource
• org.sigpath.action.DBWriteAccess
• org.sigpath.adapter.EnzymaticAdapter
• java.util.EventListener
  • java.awt.event.ActionListener
    • org.sigpath.navigator.controllers.MainViewController
  • org.sigpath.navigator.controllers.MainViewController
• org.sigpath.datamodel.ExternalReferences
• org.sigpath.axis.generator.IdentifierGenerator
• org.sigpath.datamodel.InteractionSites
• org.sigpath.tapestry.components.table.ISpEntitySelectionListener
• org.sigpath.database.JdoExtension
• org.sigpath.datamodel.LiteratureReference
• org.sigpath.datamodel.LiteratureReferences
• org.sigpath.navigator.mapping.MappingStrategy
• org.sigpath.adapter.MoleculeDisplay
• org.sigpath.datamodel.Organism
• org.sigpath.model.PagedCollection
• org.sigpath.datamodel.Parameter
• org.sigpath.datamodel.reviews.PendingItem
• org.sigpath.util.Predicate
• org.sigpath.reference.PubMedInfo
• org.sigpath.adapter.ReactionAdapter
• java.rmi.Remote
  • org.sigpath.axis.generator.ws.IdentifierGenerator
  • org.sigpath.axis.navigator.ws.SigPath
  • org.sigpath.axis.navigatorcastor.ws.SigPathCastor
• org.sigpath.datamodel.ResidueRange
• org.sigpath.action.Secure
  • org.sigpath.action.SecureAdmin
• javax.xml.rpc.Service
  • org.sigpath.axis.generator.ws.IdentifierGeneratorService
  • org.sigpath.axis.navigatorcastor.ws.SigPathCastorService
  • org.sigpath.axis.navigator.ws.SigPathService
• org.sigpath.axis.navigator.SigPath
• org.sigpath.axis.navigatorcastor.SigPathCastor
• org.sigpath.datamodel.SigPathFactory
• org.sigpath.database.SigPathManager
  • org.sigpath.database.SPIDManager
• org.sigpath.task.Task
  • org.sigpath.task.diagrams.GraphTechnology
  • org.sigpath.task.ITSearchTask
• org.sigpath.database.TransactionManager

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.sigpath.adapter.ValidationErrors.codes