Package org.sigpath.task.xml

XML Import/Export Tasks.

See:
Description

Class Summary

TConfirmComponent	Confirms Component Data.
TConfirmEnzymatic	Confirms Enzymatic Reaction Data.
TConfirmReactions	Confirms Reaction Data.
TCoreTasks	Core Validation, Confirmation and Export Utility Functions.
TCoreValidate	Common SigPath Validation Utilities.
TExportBase	Base Class for Exporting SigPath Entities to XML.
TExportModels	Exports Models to XML.
TExportPendingReviews	TODO: Now replaced by TExportPendingList, should be removed once TExportPendingList has been running "bug-free" for a while.
TExportStandaloneModel	Exports a model to XML (standalone mode).
TImportBase	Base Class for Importing SigPath Entities to XML
TSaveComponent	Saves Component Submission to Database.
TSaveConcMeasurements	Saves ConcentrationMeasurements Submission to Database.
TSaveEnzymatic	Saves Enzymatic Reaction Submission to Database.
TSaveKineticInteractions	provides generic methods for importing kineticInteractions.
TSaveKinetics
TSaveModels	Saves Model Submission to Database.
TSaveNamedChemicalInteractions	Saves Named Chemical Interaction Submission to Database.
TSaveNamedChemicals	Saves Named Chemical Submission to Database.
TSavePathways	Saves Pathway Submission to Database.
TSavePendingReviews	Saves PendingReviews to database.
TSaveProteins	Saves Protein Submission to Database.
TSaveReactions	Saves Reaction Submission to Database.
TSaveSmallMolecules	Saves SmallMolecule Submission to Database.
TUpdateReactions	//todo the kinetic and kinetic bindings are not updated Updates Reaction Submission to Database.
TValidateComponent	Validates Component Data.
TValidateConcMeasurements	Validates ConcentrationMeasurement Data.
TValidateEnzymatic	Validates Enzymatic Reaction Data.
TValidateKineticInteractions	Check that the Kinetic Interaction is valid.
TValidateKinetics	Validates the kinetics.
TValidateModelCompartments
TValidateModelConcentrations
TValidateModelExcludedReactions
TValidateModelReactions
TValidateModels	Validates Model Data.
TValidateNamedChemicalInteractions	Validates Named Chemical Interaction Data.
TValidateNamedChemicals	Validates NamedChemical Data.
TValidatePathways	Validates Model Data.
TValidatePendingReviews	Validates Pending Reviews.
TValidateProteins	Validates Protein Data.
TValidateReactions	Validates Reaction Data.
TValidateSmallMolecules	Validates Small Molecule Data.
TValidateSPE	Base Class for Validating All SigPathEntities.

Package org.sigpath.task.xml Description

XML Import/Export Tasks.