Package org.sigpath.task.model

Class Summary

ExportWriter	abstract class for all exports except kinetikit exports
JSimWriter	Used to append SBMLEntity instances in a JSim format.
MoleculeComparator	Compares two molecules by the spid of their chemical.
MoleculeRefComparator
SBMLCompartment	This class may not be very usefull since equivalency between sigpath Compartment class and SBML Compartment classes is quasi-perfect.
SBMLEntity	SBML Entity (equiv.
SBMLEntityComparator
SBMLL1V1Writer	To be used of exports to sbml level1 version1 (species attributes referred as "specie")
SBMLL1V2Writer	To be used for exports to sbml level1 version2 (species attributes referred as "species")
SBMLL2Writer	To be used for sbml level2 version1 exports.
SBMLReaction	Equivalent to an reaction in sbml langage.
SBMLReactionComparator
SBMLSpecies
SBMLWriter	SBMLWriter instances enable one to append to an xml file the components of a model constituted by SBMLEntity instances, according to the sbml schema.
SigPathEntityComparator	Compares two SigPath entities based on the comparison of their spids.
TempReactionComparator
TExportModel
TExportModelKK	Exports a Model in the Kinetikit format.
TExportModelReactionsFromSpids	Should be used on Reactions and Enzymatic Reactions only.
TGetMoleculesFromReactions
TSBMLModelExport	This class enables creating an SBML model, constituted currently only by instances of SBMLcompartments, SBMLspecies and SBMLreactions (from elementary and enzymatic reactions).