org.sigpath.navigator.mapping
Class CompactNodesMapping

java.lang.Object
  org.sigpath.navigator.mapping.CompactNodesMapping

All Implemented Interfaces:

MappingStrategy

public class CompactNodesMapping
extends Object
implements MappingStrategy

In this mapping, interactions / reactions / pathways / models are represented by all the chemical nodes that are associated with them. Thus, this class is called compact nodes mapping. The code is very similar to that of TViewImageYFiles.

Field Summary

static int	ARROW
static int	ARROW_CUSTOM
static int	ARROW_ENZYMATIC
static int	ARROW_MASSACTION
static int	COMPLEX
static int	CONC
static int	CONCEDGE
static int	ENZYME
static int	ENZYMEEDGE
static int	ENZYMEEDGE_BLUR
static int	EREACTION
static int	NAMEDCHEMICAL
static int	NOARROW
static int	NOARROW_CUSTOM
static int	NOARROW_ENZYMATIC
static int	NOARROW_MASSACTION
static int	PENDINGLIST
static int	PROTEIN
static int	REACTION
static int	SMALLMOL

Constructor Summary

CompactNodesMapping()

Method Summary

void	mapEntitiesToGraph(Collection entities, GraphicsModel model, y.view.Graph2D yGraph) Maps a collection of SigPath entity summaries to nodes and edges in the destination graph.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

REACTION

public static final int REACTION

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EREACTION

public static final int EREACTION

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PROTEIN

public static final int PROTEIN

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SMALLMOL

public static final int SMALLMOL

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COMPLEX

public static final int COMPLEX

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ENZYME

public static final int ENZYME

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NAMEDCHEMICAL

public static final int NAMEDCHEMICAL

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CONC

public static final int CONC

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PENDINGLIST

public static final int PENDINGLIST

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NOARROW

public static final int NOARROW

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NOARROW_MASSACTION

public static final int NOARROW_MASSACTION

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NOARROW_ENZYMATIC

public static final int NOARROW_ENZYMATIC

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NOARROW_CUSTOM

public static final int NOARROW_CUSTOM

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ARROW

public static final int ARROW

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ARROW_MASSACTION

public static final int ARROW_MASSACTION

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ARROW_ENZYMATIC

public static final int ARROW_ENZYMATIC

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ARROW_CUSTOM

public static final int ARROW_CUSTOM

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ENZYMEEDGE

public static final int ENZYMEEDGE

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ENZYMEEDGE_BLUR

public static final int ENZYMEEDGE_BLUR

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CONCEDGE

public static final int CONCEDGE

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Constructor Detail

CompactNodesMapping

public CompactNodesMapping()

Method Detail

mapEntitiesToGraph

public void mapEntitiesToGraph(Collection entities,
                               GraphicsModel model,
                               y.view.Graph2D yGraph)

Maps a collection of SigPath entity summaries to nodes and edges in the destination graph.

Specified by:

mapEntitiesToGraph in interface MappingStrategy

Parameters:

entities - Collection of visible entities (forward references included).

model - The graphics model that the method will use to determine which nodes are visible or hidden

yGraph - The destination graph.