org.sigpath.form
Class SpecifyReactionParameters

java.lang.Object
  org.apache.struts.action.ActionForm
      org.sigpath.form.SpecifyReactionParameters

All Implemented Interfaces:

Serializable

public class SpecifyReactionParameters
extends org.apache.struts.action.ActionForm

Form bean for Specifying Reaction Parameters. The form contains the following fields:

• concentrations (array)
• concentration_units (array)
• interation_sites (array)
• k_forward
• k_backward
• k_forward_unit
• k_backward_unit
• pub_med_ids (array):

Version:

$Revision: 8030 $

Author:

Ethan Cerami

See Also:

Serialized Form

Field Summary

Fields inherited from class org.apache.struts.action.ActionForm

multipartRequestHandler, servlet

Constructor Summary

SpecifyReactionParameters()

Method Summary

String	getConcentration_buffered(int i)
String	getConcentration_unit(int i)
String	getConcentration(int i) Concentration Getters/Setters
String	getDesc() Description Getters/Setters
String	getEnzyme_concentration_unit()
String	getEnzyme_concentration()
String	getK_backward_unit()
String	getK_backward()
String	getK_forward_unit()
String	getK_forward() Reaction Rates Getters/Setters
String	getK_michaelis_unit()
String	getK_michaelis() K_Michaelis
String	getK_p_unit()
String	getK_p() K_P
String	getK1_over_kp() K1_over_KP
String	getPublication(int i) Publication Getters/Setters
String	getPublicationNote(int i) PublicationNotes Getters/Setters
String	getSite(int i) Interaction Sites Getters/Setters
String	getV_max_unit()
String	getV_max() V_Max and Enzyme_concentration
boolean	hasAValue(String value)
void	setConcentration_buffered(int i, String value)
void	setConcentration_unit(int i, String value)
void	setConcentration(int i, String value)
void	setDesc(String value)
void	setEnzyme_concentration_unit(String value)
void	setEnzyme_concentration(String value)
void	setK_backward_unit(String value)
void	setK_backward(String value)
void	setK_forward_unit(String value)
void	setK_forward(String value)
void	setK_michaelis_unit(String value)
void	setK_michaelis(String value)
void	setK_p_unit(String value)
void	setK_p(String value)
void	setK1_over_kp(String value)
void	setPublication(int i, String value)
void	setPublicationNote(int i, String value)
void	setSite(int i, String value)
void	setV_max_unit(String value)
void	setV_max(String value)
double	to_double(String dStr)
org.apache.struts.action.ActionErrors	validate(org.apache.struts.action.ActionMapping mapping, HttpServletRequest request) Validate the properties that have been set from this HTTP request, and return an ActionErrors object that encapsulates any validation errors that have been found.

Methods inherited from class org.apache.struts.action.ActionForm

getMultipartRequestHandler, getServlet, getServletWrapper, reset, reset, setMultipartRequestHandler, setServlet, validate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SpecifyReactionParameters

public SpecifyReactionParameters()

Method Detail

getConcentration

public String getConcentration(int i)

Concentration Getters/Setters

setConcentration

public void setConcentration(int i,
                             String value)

getConcentration_unit

public String getConcentration_unit(int i)

setConcentration_unit

public void setConcentration_unit(int i,
                                  String value)

getConcentration_buffered

public String getConcentration_buffered(int i)

setConcentration_buffered

public void setConcentration_buffered(int i,
                                      String value)

getDesc

public String getDesc()

Description Getters/Setters

setDesc

public void setDesc(String value)

getSite

public String getSite(int i)

Interaction Sites Getters/Setters

setSite

public void setSite(int i,
                    String value)

getPublication

public String getPublication(int i)

Publication Getters/Setters

setPublication

public void setPublication(int i,
                           String value)

getPublicationNote

public String getPublicationNote(int i)

PublicationNotes Getters/Setters

setPublicationNote

public void setPublicationNote(int i,
                               String value)

getK_forward

public String getK_forward()

Reaction Rates Getters/Setters

setK_forward

public void setK_forward(String value)

getK_backward

public String getK_backward()

setK_backward

public void setK_backward(String value)

getK_forward_unit

public String getK_forward_unit()

setK_forward_unit

public void setK_forward_unit(String value)

getK_backward_unit

public String getK_backward_unit()

setK_backward_unit

public void setK_backward_unit(String value)

getK_michaelis

public String getK_michaelis()

K_Michaelis

setK_michaelis

public void setK_michaelis(String value)

getK_michaelis_unit

public String getK_michaelis_unit()

setK_michaelis_unit

public void setK_michaelis_unit(String value)

getV_max

public String getV_max()

V_Max and Enzyme_concentration

setV_max

public void setV_max(String value)

getV_max_unit

public String getV_max_unit()

setV_max_unit

public void setV_max_unit(String value)

getEnzyme_concentration

public String getEnzyme_concentration()

getEnzyme_concentration_unit

public String getEnzyme_concentration_unit()

setEnzyme_concentration

public void setEnzyme_concentration(String value)

setEnzyme_concentration_unit

public void setEnzyme_concentration_unit(String value)

getK_p

public String getK_p()

K_P

setK_p

public void setK_p(String value)

getK_p_unit

public String getK_p_unit()

setK_p_unit

public void setK_p_unit(String value)

getK1_over_kp

public String getK1_over_kp()

K1_over_KP

setK1_over_kp

public void setK1_over_kp(String value)

to_double

public double to_double(String dStr)
                 throws NumberFormatException

Throws:

NumberFormatException

validate

public org.apache.struts.action.ActionErrors validate(org.apache.struts.action.ActionMapping mapping,
                                                      HttpServletRequest request)

Validate the properties that have been set from this HTTP request, and return an ActionErrors object that encapsulates any validation errors that have been found. If no errors are found, return null or an ActionErrors object with no recorded error messages.

Overrides:

validate in class org.apache.struts.action.ActionForm

Parameters:

mapping - The mapping used to select this instance

request - The servlet request we are processing

Returns:

ActionErrors object containing all validation errors

hasAValue

public boolean hasAValue(String value)