org.sigpath.bioimport.reaction2
Class NamedChemicalRef

java.lang.Object
  org.sigpath.bioimport.reaction2.NamedChemicalRef

All Implemented Interfaces:

Serializable

public class NamedChemicalRef
extends Object
implements Serializable

The reference value of a named chemical.

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

NamedChemicalRef()

Method Summary

String	getAc() Returns the value of field 'ac'.
Object	getIdref() Returns the value of field 'idref'.
String	getOrganism() Returns the value of field 'organism'.
String	getRole() Returns the value of field 'role'.
String	getSpid() Returns the value of field 'spid'.
boolean	isValid() Method isValid
void	marshal(ContentHandler handler) Method marshal
void	marshal(Writer out) Method marshal
void	setAc(String ac) Sets the value of field 'ac'.
void	setIdref(Object idref) Sets the value of field 'idref'.
void	setOrganism(String organism) Sets the value of field 'organism'.
void	setRole(String role) Sets the value of field 'role'.
void	setSpid(String spid) Sets the value of field 'spid'.
static NamedChemicalRef	unmarshal(Reader reader) Method unmarshal
void	validate() Method validate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NamedChemicalRef

public NamedChemicalRef()

Method Detail

getAc

public String getAc()

Returns the value of field 'ac'.

Returns:

String

getIdref

public Object getIdref()

Returns the value of field 'idref'.

Returns:

Object

getOrganism

public String getOrganism()

Returns the value of field 'organism'.

Returns:

String

getRole

public String getRole()

Returns the value of field 'role'. The field 'role' has the following description: Annotates the role of the named-chemical in an interaction, e.g. binding partner, substrate.

Returns:

String

getSpid

public String getSpid()

Returns the value of field 'spid'.

Returns:

String

isValid

public boolean isValid()

Method isValid

Returns:

boolean

marshal

public void marshal(Writer out)
             throws MarshalException,
                    ValidationException

Method marshal

Parameters:

out -

Throws:

MarshalException

ValidationException

marshal

public void marshal(ContentHandler handler)
             throws IOException,
                    MarshalException,
                    ValidationException

Method marshal

Parameters:

handler -

Throws:

IOException

MarshalException

ValidationException

setAc

public void setAc(String ac)

Sets the value of field 'ac'.

Parameters:

ac - the value of field 'ac'.

setIdref

public void setIdref(Object idref)

Sets the value of field 'idref'.

Parameters:

idref - the value of field 'idref'.

setOrganism

public void setOrganism(String organism)

Sets the value of field 'organism'.

Parameters:

organism - the value of field 'organism'.

setRole

public void setRole(String role)

Sets the value of field 'role'. The field 'role' has the following description: Annotates the role of the named-chemical in an interaction, e.g. binding partner, substrate.

Parameters:

role - the value of field 'role'.

setSpid

public void setSpid(String spid)

Sets the value of field 'spid'.

Parameters:

spid - the value of field 'spid'.

unmarshal

public static NamedChemicalRef unmarshal(Reader reader)
                                  throws MarshalException,
                                         ValidationException

Method unmarshal

Parameters:

reader -

Returns:

NamedChemicalRef

Throws:

MarshalException

ValidationException

validate

public void validate()
              throws ValidationException

Method validate

Throws:

ValidationException