org.sigpath.bioimport.reaction2
Class NamedChemicalInteractions

java.lang.Object
  org.sigpath.bioimport.reaction2.NamedChemicalInteractions

All Implemented Interfaces:

Serializable

public class NamedChemicalInteractions
extends Object
implements Serializable

Groups named-chemical-interaction definitions in SigPath

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

NamedChemicalInteractions()

Method Summary

void	addNamedChemicalInteraction(int index, NamedChemicalInteraction vNamedChemicalInteraction) Method addNamedChemicalInteraction
void	addNamedChemicalInteraction(NamedChemicalInteraction vNamedChemicalInteraction) Method addNamedChemicalInteraction
void	clearNamedChemicalInteraction() Method clearNamedChemicalInteraction
Enumeration	enumerateNamedChemicalInteraction() Method enumerateNamedChemicalInteraction
NamedChemicalInteraction[]	getNamedChemicalInteraction() Method getNamedChemicalInteraction
NamedChemicalInteraction	getNamedChemicalInteraction(int index) Method getNamedChemicalInteraction
int	getNamedChemicalInteractionCount() Method getNamedChemicalInteractionCount
boolean	isValid() Method isValid
void	marshal(ContentHandler handler) Method marshal
void	marshal(Writer out) Method marshal
boolean	removeNamedChemicalInteraction(NamedChemicalInteraction vNamedChemicalInteraction) Method removeNamedChemicalInteraction
void	setNamedChemicalInteraction(int index, NamedChemicalInteraction vNamedChemicalInteraction) Method setNamedChemicalInteraction
void	setNamedChemicalInteraction(NamedChemicalInteraction[] namedChemicalInteractionArray) Method setNamedChemicalInteraction
static NamedChemicalInteractions	unmarshal(Reader reader) Method unmarshal
void	validate() Method validate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NamedChemicalInteractions

public NamedChemicalInteractions()

Method Detail

addNamedChemicalInteraction

public void addNamedChemicalInteraction(NamedChemicalInteraction vNamedChemicalInteraction)
                                 throws IndexOutOfBoundsException

Method addNamedChemicalInteraction

Parameters:

vNamedChemicalInteraction -

Throws:

IndexOutOfBoundsException

addNamedChemicalInteraction

public void addNamedChemicalInteraction(int index,
                                        NamedChemicalInteraction vNamedChemicalInteraction)
                                 throws IndexOutOfBoundsException

Method addNamedChemicalInteraction

Parameters:

index -

vNamedChemicalInteraction -

Throws:

IndexOutOfBoundsException

clearNamedChemicalInteraction

public void clearNamedChemicalInteraction()

Method clearNamedChemicalInteraction

enumerateNamedChemicalInteraction

public Enumeration enumerateNamedChemicalInteraction()

Method enumerateNamedChemicalInteraction

Returns:

Enumeration

getNamedChemicalInteraction

public NamedChemicalInteraction getNamedChemicalInteraction(int index)
                                                     throws IndexOutOfBoundsException

Method getNamedChemicalInteraction

Parameters:

index -

Returns:

NamedChemicalInteraction

Throws:

IndexOutOfBoundsException

getNamedChemicalInteraction

public NamedChemicalInteraction[] getNamedChemicalInteraction()

Method getNamedChemicalInteraction

Returns:

NamedChemicalInteraction

getNamedChemicalInteractionCount

public int getNamedChemicalInteractionCount()

Method getNamedChemicalInteractionCount

Returns:

int

isValid

public boolean isValid()

Method isValid

Returns:

boolean

marshal

public void marshal(Writer out)
             throws MarshalException,
                    ValidationException

Method marshal

Parameters:

out -

Throws:

MarshalException

ValidationException

marshal

public void marshal(ContentHandler handler)
             throws IOException,
                    MarshalException,
                    ValidationException

Method marshal

Parameters:

handler -

Throws:

IOException

MarshalException

ValidationException

removeNamedChemicalInteraction

public boolean removeNamedChemicalInteraction(NamedChemicalInteraction vNamedChemicalInteraction)

Method removeNamedChemicalInteraction

Parameters:

vNamedChemicalInteraction -

Returns:

boolean

setNamedChemicalInteraction

public void setNamedChemicalInteraction(int index,
                                        NamedChemicalInteraction vNamedChemicalInteraction)
                                 throws IndexOutOfBoundsException

Method setNamedChemicalInteraction

Parameters:

index -

vNamedChemicalInteraction -

Throws:

IndexOutOfBoundsException

setNamedChemicalInteraction

public void setNamedChemicalInteraction(NamedChemicalInteraction[] namedChemicalInteractionArray)

Method setNamedChemicalInteraction

Parameters:

namedChemicalInteractionArray -

unmarshal

public static NamedChemicalInteractions unmarshal(Reader reader)
                                           throws MarshalException,
                                                  ValidationException

Method unmarshal

Parameters:

reader -

Returns:

NamedChemicalInteractions

Throws:

MarshalException

ValidationException

validate

public void validate()
              throws ValidationException

Method validate

Throws:

ValidationException