org.sigpath.bioimport.reaction2
Class ModelReaction

java.lang.Object
  org.sigpath.bioimport.reaction2.ModelReaction

All Implemented Interfaces:

Serializable

public class ModelReaction
extends Object
implements Serializable

Used to identify a reaction within a model

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

ModelReaction()

Method Summary

String	getDescription() Returns the value of field 'description'.
Object	getIdref() Returns the value of field 'idref'.
String	getSpid() Returns the value of field 'spid'.
String	getSummary() Returns the value of field 'summary'.
boolean	isValid() Method isValid
void	marshal(ContentHandler handler) Method marshal
void	marshal(Writer out) Method marshal
void	setDescription(String description) Sets the value of field 'description'.
void	setIdref(Object idref) Sets the value of field 'idref'.
void	setSpid(String spid) Sets the value of field 'spid'.
void	setSummary(String summary) Sets the value of field 'summary'.
static ModelReaction	unmarshal(Reader reader) Method unmarshal
void	validate() Method validate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ModelReaction

public ModelReaction()

Method Detail

getDescription

public String getDescription()

Returns the value of field 'description'. The field 'description' has the following description: Description for this reaction

Returns:

String

getIdref

public Object getIdref()

Returns the value of field 'idref'.

Returns:

Object

getSpid

public String getSpid()

Returns the value of field 'spid'.

Returns:

String

getSummary

public String getSummary()

Returns the value of field 'summary'. The field 'summary' has the following description: Summary of the reaction. Will look like A + B < ... > C

Returns:

String

isValid

public boolean isValid()

Method isValid

Returns:

boolean

marshal

public void marshal(Writer out)
             throws MarshalException,
                    ValidationException

Method marshal

Parameters:

out -

Throws:

MarshalException

ValidationException

marshal

public void marshal(ContentHandler handler)
             throws IOException,
                    MarshalException,
                    ValidationException

Method marshal

Parameters:

handler -

Throws:

IOException

MarshalException

ValidationException

setDescription

public void setDescription(String description)

Sets the value of field 'description'. The field 'description' has the following description: Description for this reaction

Parameters:

description - the value of field 'description'.

setIdref

public void setIdref(Object idref)

Sets the value of field 'idref'.

Parameters:

idref - the value of field 'idref'.

setSpid

public void setSpid(String spid)

Sets the value of field 'spid'.

Parameters:

spid - the value of field 'spid'.

setSummary

public void setSummary(String summary)

Sets the value of field 'summary'. The field 'summary' has the following description: Summary of the reaction. Will look like A + B < ... > C

Parameters:

summary - the value of field 'summary'.

unmarshal

public static ModelReaction unmarshal(Reader reader)
                               throws MarshalException,
                                      ValidationException

Method unmarshal

Parameters:

reader -

Returns:

ModelReaction

Throws:

MarshalException

ValidationException

validate

public void validate()
              throws ValidationException

Method validate

Throws:

ValidationException