org.sigpath.bioimport.reaction2
Class Left

java.lang.Object
  org.sigpath.bioimport.reaction2.Left

All Implemented Interfaces:

Serializable

public class Left
extends Object
implements Serializable

Contains molecules on the left side of a reaction

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

Left()

Method Summary

void	addMolecule(int index, Molecule vMolecule) Method addMolecule
void	addMolecule(Molecule vMolecule) Method addMolecule
void	clearMolecule() Method clearMolecule
Enumeration	enumerateMolecule() Method enumerateMolecule
Molecule[]	getMolecule() Method getMolecule
Molecule	getMolecule(int index) Method getMolecule
int	getMoleculeCount() Method getMoleculeCount
boolean	isValid() Method isValid
void	marshal(ContentHandler handler) Method marshal
void	marshal(Writer out) Method marshal
boolean	removeMolecule(Molecule vMolecule) Method removeMolecule
void	setMolecule(int index, Molecule vMolecule) Method setMolecule
void	setMolecule(Molecule[] moleculeArray) Method setMolecule
static Left	unmarshal(Reader reader) Method unmarshal
void	validate() Method validate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Left

public Left()

Method Detail

addMolecule

public void addMolecule(Molecule vMolecule)
                 throws IndexOutOfBoundsException

Method addMolecule

Parameters:

vMolecule -

Throws:

IndexOutOfBoundsException

addMolecule

public void addMolecule(int index,
                        Molecule vMolecule)
                 throws IndexOutOfBoundsException

Method addMolecule

Parameters:

index -

vMolecule -

Throws:

IndexOutOfBoundsException

clearMolecule

public void clearMolecule()

Method clearMolecule

enumerateMolecule

public Enumeration enumerateMolecule()

Method enumerateMolecule

Returns:

Enumeration

getMolecule

public Molecule getMolecule(int index)
                     throws IndexOutOfBoundsException

Method getMolecule

Parameters:

index -

Returns:

Molecule

Throws:

IndexOutOfBoundsException

getMolecule

public Molecule[] getMolecule()

Method getMolecule

Returns:

Molecule

getMoleculeCount

public int getMoleculeCount()

Method getMoleculeCount

Returns:

int

isValid

public boolean isValid()

Method isValid

Returns:

boolean

marshal

public void marshal(Writer out)
             throws MarshalException,
                    ValidationException

Method marshal

Parameters:

out -

Throws:

MarshalException

ValidationException

marshal

public void marshal(ContentHandler handler)
             throws IOException,
                    MarshalException,
                    ValidationException

Method marshal

Parameters:

handler -

Throws:

IOException

MarshalException

ValidationException

removeMolecule

public boolean removeMolecule(Molecule vMolecule)

Method removeMolecule

Parameters:

vMolecule -

Returns:

boolean

setMolecule

public void setMolecule(int index,
                        Molecule vMolecule)
                 throws IndexOutOfBoundsException

Method setMolecule

Parameters:

index -

vMolecule -

Throws:

IndexOutOfBoundsException

setMolecule

public void setMolecule(Molecule[] moleculeArray)

Method setMolecule

Parameters:

moleculeArray -

unmarshal

public static Left unmarshal(Reader reader)
                      throws MarshalException,
                             ValidationException

Method unmarshal

Parameters:

reader -

Returns:

Left

Throws:

MarshalException

ValidationException

validate

public void validate()
              throws ValidationException

Method validate

Throws:

ValidationException