org.sigpath.bioimport.reaction2
Class KineticBindings

java.lang.Object
  org.sigpath.bioimport.reaction2.KineticBindings

All Implemented Interfaces:

Serializable

public class KineticBindings
extends Object
implements Serializable

name to constant/chemical elements

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

KineticBindings()

Method Summary

void	addParameterBinding(int index, ParameterBinding vParameterBinding) Method addParameterBinding
void	addParameterBinding(ParameterBinding vParameterBinding) Method addParameterBinding
void	addSpeciesBinding(int index, SpeciesBinding vSpeciesBinding) Method addSpeciesBinding
void	addSpeciesBinding(SpeciesBinding vSpeciesBinding) Method addSpeciesBinding
void	clearParameterBinding() Method clearParameterBinding
void	clearSpeciesBinding() Method clearSpeciesBinding
Enumeration	enumerateParameterBinding() Method enumerateParameterBinding
Enumeration	enumerateSpeciesBinding() Method enumerateSpeciesBinding
ParameterBinding[]	getParameterBinding() Method getParameterBinding
ParameterBinding	getParameterBinding(int index) Method getParameterBinding
int	getParameterBindingCount() Method getParameterBindingCount
SpeciesBinding[]	getSpeciesBinding() Method getSpeciesBinding
SpeciesBinding	getSpeciesBinding(int index) Method getSpeciesBinding
int	getSpeciesBindingCount() Method getSpeciesBindingCount
boolean	isValid() Method isValid
void	marshal(ContentHandler handler) Method marshal
void	marshal(Writer out) Method marshal
boolean	removeParameterBinding(ParameterBinding vParameterBinding) Method removeParameterBinding
boolean	removeSpeciesBinding(SpeciesBinding vSpeciesBinding) Method removeSpeciesBinding
void	setParameterBinding(int index, ParameterBinding vParameterBinding) Method setParameterBinding
void	setParameterBinding(ParameterBinding[] parameterBindingArray) Method setParameterBinding
void	setSpeciesBinding(int index, SpeciesBinding vSpeciesBinding) Method setSpeciesBinding
void	setSpeciesBinding(SpeciesBinding[] speciesBindingArray) Method setSpeciesBinding
static KineticBindings	unmarshal(Reader reader) Method unmarshal
void	validate() Method validate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

KineticBindings

public KineticBindings()

Method Detail

addParameterBinding

public void addParameterBinding(ParameterBinding vParameterBinding)
                         throws IndexOutOfBoundsException

Method addParameterBinding

Parameters:

vParameterBinding -

Throws:

IndexOutOfBoundsException

addParameterBinding

public void addParameterBinding(int index,
                                ParameterBinding vParameterBinding)
                         throws IndexOutOfBoundsException

Method addParameterBinding

Parameters:

index -

vParameterBinding -

Throws:

IndexOutOfBoundsException

addSpeciesBinding

public void addSpeciesBinding(SpeciesBinding vSpeciesBinding)
                       throws IndexOutOfBoundsException

Method addSpeciesBinding

Parameters:

vSpeciesBinding -

Throws:

IndexOutOfBoundsException

addSpeciesBinding

public void addSpeciesBinding(int index,
                              SpeciesBinding vSpeciesBinding)
                       throws IndexOutOfBoundsException

Method addSpeciesBinding

Parameters:

index -

vSpeciesBinding -

Throws:

IndexOutOfBoundsException

clearParameterBinding

public void clearParameterBinding()

Method clearParameterBinding

clearSpeciesBinding

public void clearSpeciesBinding()

Method clearSpeciesBinding

enumerateParameterBinding

public Enumeration enumerateParameterBinding()

Method enumerateParameterBinding

Returns:

Enumeration

enumerateSpeciesBinding

public Enumeration enumerateSpeciesBinding()

Method enumerateSpeciesBinding

Returns:

Enumeration

getParameterBinding

public ParameterBinding getParameterBinding(int index)
                                     throws IndexOutOfBoundsException

Method getParameterBinding

Parameters:

index -

Returns:

ParameterBinding

Throws:

IndexOutOfBoundsException

getParameterBinding

public ParameterBinding[] getParameterBinding()

Method getParameterBinding

Returns:

ParameterBinding

getParameterBindingCount

public int getParameterBindingCount()

Method getParameterBindingCount

Returns:

int

getSpeciesBinding

public SpeciesBinding getSpeciesBinding(int index)
                                 throws IndexOutOfBoundsException

Method getSpeciesBinding

Parameters:

index -

Returns:

SpeciesBinding

Throws:

IndexOutOfBoundsException

getSpeciesBinding

public SpeciesBinding[] getSpeciesBinding()

Method getSpeciesBinding

Returns:

SpeciesBinding

getSpeciesBindingCount

public int getSpeciesBindingCount()

Method getSpeciesBindingCount

Returns:

int

isValid

public boolean isValid()

Method isValid

Returns:

boolean

marshal

public void marshal(Writer out)
             throws MarshalException,
                    ValidationException

Method marshal

Parameters:

out -

Throws:

MarshalException

ValidationException

marshal

public void marshal(ContentHandler handler)
             throws IOException,
                    MarshalException,
                    ValidationException

Method marshal

Parameters:

handler -

Throws:

IOException

MarshalException

ValidationException

removeParameterBinding

public boolean removeParameterBinding(ParameterBinding vParameterBinding)

Method removeParameterBinding

Parameters:

vParameterBinding -

Returns:

boolean

removeSpeciesBinding

public boolean removeSpeciesBinding(SpeciesBinding vSpeciesBinding)

Method removeSpeciesBinding

Parameters:

vSpeciesBinding -

Returns:

boolean

setParameterBinding

public void setParameterBinding(int index,
                                ParameterBinding vParameterBinding)
                         throws IndexOutOfBoundsException

Method setParameterBinding

Parameters:

index -

vParameterBinding -

Throws:

IndexOutOfBoundsException

setParameterBinding

public void setParameterBinding(ParameterBinding[] parameterBindingArray)

Method setParameterBinding

Parameters:

parameterBindingArray -

setSpeciesBinding

public void setSpeciesBinding(int index,
                              SpeciesBinding vSpeciesBinding)
                       throws IndexOutOfBoundsException

Method setSpeciesBinding

Parameters:

index -

vSpeciesBinding -

Throws:

IndexOutOfBoundsException

setSpeciesBinding

public void setSpeciesBinding(SpeciesBinding[] speciesBindingArray)

Method setSpeciesBinding

Parameters:

speciesBindingArray -

unmarshal

public static KineticBindings unmarshal(Reader reader)
                                 throws MarshalException,
                                        ValidationException

Method unmarshal

Parameters:

reader -

Returns:

KineticBindings

Throws:

MarshalException

ValidationException

validate

public void validate()
              throws ValidationException

Method validate

Throws:

ValidationException