org.sigpath.bioimport.reaction2
Class InternalLinks

java.lang.Object
  org.sigpath.bioimport.reaction2.InternalLinks

All Implemented Interfaces:

Serializable

public class InternalLinks
extends Object
implements Serializable

Used to describe internal links within SigPath

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

InternalLinks()

Method Summary

void	addInvolvedInReaction(int index, InvolvedInReaction vInvolvedInReaction) Method addInvolvedInReaction
void	addInvolvedInReaction(InvolvedInReaction vInvolvedInReaction) Method addInvolvedInReaction
void	clearInvolvedInReaction() Method clearInvolvedInReaction
Enumeration	enumerateInvolvedInReaction() Method enumerateInvolvedInReaction
InvolvedInReaction[]	getInvolvedInReaction() Method getInvolvedInReaction
InvolvedInReaction	getInvolvedInReaction(int index) Method getInvolvedInReaction
int	getInvolvedInReactionCount() Method getInvolvedInReactionCount
boolean	isValid() Method isValid
void	marshal(ContentHandler handler) Method marshal
void	marshal(Writer out) Method marshal
boolean	removeInvolvedInReaction(InvolvedInReaction vInvolvedInReaction) Method removeInvolvedInReaction
void	setInvolvedInReaction(int index, InvolvedInReaction vInvolvedInReaction) Method setInvolvedInReaction
void	setInvolvedInReaction(InvolvedInReaction[] involvedInReactionArray) Method setInvolvedInReaction
static InternalLinks	unmarshal(Reader reader) Method unmarshal
void	validate() Method validate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

InternalLinks

public InternalLinks()

Method Detail

addInvolvedInReaction

public void addInvolvedInReaction(InvolvedInReaction vInvolvedInReaction)
                           throws IndexOutOfBoundsException

Method addInvolvedInReaction

Parameters:

vInvolvedInReaction -

Throws:

IndexOutOfBoundsException

addInvolvedInReaction

public void addInvolvedInReaction(int index,
                                  InvolvedInReaction vInvolvedInReaction)
                           throws IndexOutOfBoundsException

Method addInvolvedInReaction

Parameters:

index -

vInvolvedInReaction -

Throws:

IndexOutOfBoundsException

clearInvolvedInReaction

public void clearInvolvedInReaction()

Method clearInvolvedInReaction

enumerateInvolvedInReaction

public Enumeration enumerateInvolvedInReaction()

Method enumerateInvolvedInReaction

Returns:

Enumeration

getInvolvedInReaction

public InvolvedInReaction getInvolvedInReaction(int index)
                                         throws IndexOutOfBoundsException

Method getInvolvedInReaction

Parameters:

index -

Returns:

InvolvedInReaction

Throws:

IndexOutOfBoundsException

getInvolvedInReaction

public InvolvedInReaction[] getInvolvedInReaction()

Method getInvolvedInReaction

Returns:

InvolvedInReaction

getInvolvedInReactionCount

public int getInvolvedInReactionCount()

Method getInvolvedInReactionCount

Returns:

int

isValid

public boolean isValid()

Method isValid

Returns:

boolean

marshal

public void marshal(Writer out)
             throws MarshalException,
                    ValidationException

Method marshal

Parameters:

out -

Throws:

MarshalException

ValidationException

marshal

public void marshal(ContentHandler handler)
             throws IOException,
                    MarshalException,
                    ValidationException

Method marshal

Parameters:

handler -

Throws:

IOException

MarshalException

ValidationException

removeInvolvedInReaction

public boolean removeInvolvedInReaction(InvolvedInReaction vInvolvedInReaction)

Method removeInvolvedInReaction

Parameters:

vInvolvedInReaction -

Returns:

boolean

setInvolvedInReaction

public void setInvolvedInReaction(int index,
                                  InvolvedInReaction vInvolvedInReaction)
                           throws IndexOutOfBoundsException

Method setInvolvedInReaction

Parameters:

index -

vInvolvedInReaction -

Throws:

IndexOutOfBoundsException

setInvolvedInReaction

public void setInvolvedInReaction(InvolvedInReaction[] involvedInReactionArray)

Method setInvolvedInReaction

Parameters:

involvedInReactionArray -

unmarshal

public static InternalLinks unmarshal(Reader reader)
                               throws MarshalException,
                                      ValidationException

Method unmarshal

Parameters:

reader -

Returns:

InternalLinks

Throws:

MarshalException

ValidationException

validate

public void validate()
              throws ValidationException

Method validate

Throws:

ValidationException