org.sigpath.bioimport.reaction2
Class ExternalReference

java.lang.Object
  org.sigpath.bioimport.reaction2.ExternalReference

All Implemented Interfaces:

Serializable

public class ExternalReference
extends Object
implements Serializable

Annotates external references. For example, a chemical may have an accession code within another database, such as SWISS-PROT.

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

ExternalReference()

Method Summary

String	getAc() Returns the value of field 'ac'.
String	getDatabase() Returns the value of field 'database'.
boolean	isValid() Method isValid
void	marshal(ContentHandler handler) Method marshal
void	marshal(Writer out) Method marshal
void	setAc(String ac) Sets the value of field 'ac'.
void	setDatabase(String database) Sets the value of field 'database'.
static ExternalReference	unmarshal(Reader reader) Method unmarshal
void	validate() Method validate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExternalReference

public ExternalReference()

Method Detail

getAc

public String getAc()

Returns the value of field 'ac'. The field 'ac' has the following description: Identifies a molecule by accession code

Returns:

String

getDatabase

public String getDatabase()

Returns the value of field 'database'. The field 'database' has the following description: Specifies the database from which an accession number for a molecule has been acquired

Returns:

String

isValid

public boolean isValid()

Method isValid

Returns:

boolean

marshal

public void marshal(Writer out)
             throws MarshalException,
                    ValidationException

Method marshal

Parameters:

out -

Throws:

MarshalException

ValidationException

marshal

public void marshal(ContentHandler handler)
             throws IOException,
                    MarshalException,
                    ValidationException

Method marshal

Parameters:

handler -

Throws:

IOException

MarshalException

ValidationException

setAc

public void setAc(String ac)

Sets the value of field 'ac'. The field 'ac' has the following description: Identifies a molecule by accession code

Parameters:

ac - the value of field 'ac'.

setDatabase

public void setDatabase(String database)

Sets the value of field 'database'. The field 'database' has the following description: Specifies the database from which an accession number for a molecule has been acquired

Parameters:

database - the value of field 'database'.

unmarshal

public static ExternalReference unmarshal(Reader reader)
                                   throws MarshalException,
                                          ValidationException

Method unmarshal

Parameters:

reader -

Returns:

ExternalReference

Throws:

MarshalException

ValidationException

validate

public void validate()
              throws ValidationException

Method validate

Throws:

ValidationException