org.sigpath.bioimport.reaction2
Class Enzyme

java.lang.Object
  org.sigpath.bioimport.reaction2.Enzyme

All Implemented Interfaces:

Serializable

public class Enzyme
extends Object
implements Serializable

Identifies the enzyme for an enzymatic reaction

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

Enzyme()

Method Summary

Molecule	getMolecule() Returns the value of field 'molecule'.
boolean	isValid() Method isValid
void	marshal(ContentHandler handler) Method marshal
void	marshal(Writer out) Method marshal
void	setMolecule(Molecule molecule) Sets the value of field 'molecule'.
static Enzyme	unmarshal(Reader reader) Method unmarshal
void	validate() Method validate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Enzyme

public Enzyme()

Method Detail

getMolecule

public Molecule getMolecule()

Returns the value of field 'molecule'. The field 'molecule' has the following description: Identifies a molecule in SigPath (for example as part of a reaction or as part of a complex) by using at least one of three attributes: idref (unique identifier for new molecules; this attribute has the highest precedence), ac. (accession number; this attribute has the second highest precedence) or spid (unique SigPath identifier; this identifier has the lowest precedence)

Returns:

Molecule

isValid

public boolean isValid()

Method isValid

Returns:

boolean

marshal

public void marshal(Writer out)
             throws MarshalException,
                    ValidationException

Method marshal

Parameters:

out -

Throws:

MarshalException

ValidationException

marshal

public void marshal(ContentHandler handler)
             throws IOException,
                    MarshalException,
                    ValidationException

Method marshal

Parameters:

handler -

Throws:

IOException

MarshalException

ValidationException

setMolecule

public void setMolecule(Molecule molecule)

Sets the value of field 'molecule'. The field 'molecule' has the following description: Identifies a molecule in SigPath (for example as part of a reaction or as part of a complex) by using at least one of three attributes: idref (unique identifier for new molecules; this attribute has the highest precedence), ac. (accession number; this attribute has the second highest precedence) or spid (unique SigPath identifier; this identifier has the lowest precedence)

Parameters:

molecule - the value of field 'molecule'.

unmarshal

public static Enzyme unmarshal(Reader reader)
                        throws MarshalException,
                               ValidationException

Method unmarshal

Parameters:

reader -

Returns:

Enzyme

Throws:

MarshalException

ValidationException

validate

public void validate()
              throws ValidationException

Method validate

Throws:

ValidationException