org.sigpath.bioimport.reaction2
Class CustomKinetic

java.lang.Object
  org.sigpath.bioimport.reaction2.CustomKinetic

All Implemented Interfaces:

Serializable

public class CustomKinetic
extends Object
implements Serializable

Class CustomKinetic.

Version:

$Revision$ $Date$

See Also:

Serialized Form

Constructor Summary

CustomKinetic()

Method Summary

Formula	getFormula() Returns the value of field 'formula'.
ParametersBindingsDeclaration	getParametersBindingsDeclaration() Returns the value of field 'parametersBindingsDeclaration'.
SpeciesBindingsDeclaration	getSpeciesBindingsDeclaration() Returns the value of field 'speciesBindingsDeclaration'.
UnitType	getUnit() Returns the value of field 'unit'.
boolean	isValid() Method isValid
void	marshal(ContentHandler handler) Method marshal
void	marshal(Writer out) Method marshal
void	setFormula(Formula formula) Sets the value of field 'formula'.
void	setParametersBindingsDeclaration(ParametersBindingsDeclaration parametersBindingsDeclaration) Sets the value of field 'parametersBindingsDeclaration'.
void	setSpeciesBindingsDeclaration(SpeciesBindingsDeclaration speciesBindingsDeclaration) Sets the value of field 'speciesBindingsDeclaration'.
void	setUnit(UnitType unit) Sets the value of field 'unit'.
static CustomKinetic	unmarshal(Reader reader) Method unmarshal
void	validate() Method validate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CustomKinetic

public CustomKinetic()

Method Detail

getFormula

public Formula getFormula()

Returns the value of field 'formula'. The field 'formula' has the following description: can be an expression like k*p1*p2, but also a numerical value (0 for instance)

Returns:

Formula

getParametersBindingsDeclaration

public ParametersBindingsDeclaration getParametersBindingsDeclaration()

Returns the value of field 'parametersBindingsDeclaration'. The field 'parametersBindingsDeclaration' has the following description: can be an expression like k*p1*p2, but also a numerical value (0 for instance)

Returns:

ParametersBindingsDeclaration

getSpeciesBindingsDeclaration

public SpeciesBindingsDeclaration getSpeciesBindingsDeclaration()

Returns the value of field 'speciesBindingsDeclaration'. The field 'speciesBindingsDeclaration' has the following description: can be an expression like k*p1*p2, but also a numerical value (0 for instance)

Returns:

SpeciesBindingsDeclaration

getUnit

public UnitType getUnit()

Returns the value of field 'unit'. The field 'unit' has the following description: Selects units for the reaction parameter

Returns:

UnitType

isValid

public boolean isValid()

Method isValid

Returns:

boolean

marshal

public void marshal(Writer out)
             throws MarshalException,
                    ValidationException

Method marshal

Parameters:

out -

Throws:

MarshalException

ValidationException

marshal

public void marshal(ContentHandler handler)
             throws IOException,
                    MarshalException,
                    ValidationException

Method marshal

Parameters:

handler -

Throws:

IOException

MarshalException

ValidationException

setFormula

public void setFormula(Formula formula)

Sets the value of field 'formula'. The field 'formula' has the following description: can be an expression like k*p1*p2, but also a numerical value (0 for instance)

Parameters:

formula - the value of field 'formula'.

setParametersBindingsDeclaration

public void setParametersBindingsDeclaration(ParametersBindingsDeclaration parametersBindingsDeclaration)

Sets the value of field 'parametersBindingsDeclaration'. The field 'parametersBindingsDeclaration' has the following description: can be an expression like k*p1*p2, but also a numerical value (0 for instance)

Parameters:

parametersBindingsDeclaration - the value of field 'parametersBindingsDeclaration'.

setSpeciesBindingsDeclaration

public void setSpeciesBindingsDeclaration(SpeciesBindingsDeclaration speciesBindingsDeclaration)

Sets the value of field 'speciesBindingsDeclaration'. The field 'speciesBindingsDeclaration' has the following description: can be an expression like k*p1*p2, but also a numerical value (0 for instance)

Parameters:

speciesBindingsDeclaration - the value of field 'speciesBindingsDeclaration'.

setUnit

public void setUnit(UnitType unit)

Sets the value of field 'unit'. The field 'unit' has the following description: Selects units for the reaction parameter

Parameters:

unit - the value of field 'unit'.

unmarshal

public static CustomKinetic unmarshal(Reader reader)
                               throws MarshalException,
                                      ValidationException

Method unmarshal

Parameters:

reader -

Returns:

CustomKinetic

Throws:

MarshalException

ValidationException

validate

public void validate()
              throws ValidationException

Method validate

Throws:

ValidationException