Package org.sigpath.bioimport

Imports Background Biological Data into the SigPath System.

See:
Description

Class Summary

DisplaySPSubmission	Given an XML SigPath Submission object, this class outputs a simple text formatted summary.
FullTextIndexer	Performs the full text indexing sigpath entities.
FullTextSearchIndexer	Performs the full text indexing sigpath entities.
GenewaysSBMLImport	Enables one to read an SBML file with annotations following to the simplified (without any references to mathml) SBML schema and the geneways schema for annotations (cf.
IdRefPostProcessingAction	Idref post-processing action.
ProteinImport	Provides a command line interface for importing proteins to the database from an xml file.
Search	Command Line Utility to test Search Functionality
SmallMoleculeImport	SmallMoleculeImport parses a file, creates SmallMolecule objects and inserts them into a database.
SmallMoleculeImporter	SmallMoleculeImporter calls the SmallMoleculeImport class to parse a file.
XMLExport	Performs XML Export of Sigpath Data.
XMLImport	Master Class for SigPath XML Import.

Package org.sigpath.bioimport Description

Imports Background Biological Data into the SigPath System.

This package is responsible for importing external biological data into the SigPath System. Currently, the package imports the following data:

• SWISS-PROT: a database of protein sequences, maintained at: http://www.expasy.ch.
• Open NCI: a database of small molecules, maintained at: http://www.nci.nih.gov/.