org.sigpath.action.biowizard
Class CommonUtil

java.lang.Object
  org.sigpath.action.biowizard.CommonUtil

public final class CommonUtil
extends Object

Common Utility Class for BioWizard Servlets and JSPs.

Method Summary

static EnzymaticReaction	extractEnzymaticReaction(SigpathSubmission submission) Extracts First Enzymatic Reaction out of XML Document; returns null if Enzymatic Reaction is not found.
static Pathway	extractPathway(SigpathSubmission submission) Extracts the Correct Pathway Object.
static Reaction	extractReaction(SigpathSubmission submission) Extracts the Correct Reaction Object.
static String	getInteractionTypeFromSession(HttpServletRequest request) Gets Interaction Type from Session.
static SigpathSubmission	getSubmissionFromSession(HttpServletRequest request) Gets XML Submission from Current Session.
static boolean	isBinding(HttpServletRequest request) Is the User Creating a Binding Reaction.
static boolean	isDePhosphorylationRxn(HttpServletRequest request) Is the User Creating a De-Phoshporylation Reaction.
static boolean	isEnzymatic(HttpServletRequest request) Is the User Creating an Enzymatic Reaction.
static boolean	isPhosphorylationRxn(HttpServletRequest request) Is the User Creating a Phoshporylation Reaction.
static void	storeInteractionTypeToSession(HttpServletRequest request, String interactionType) Stores Interaction Type to Session.
static void	storeSubmissionToSession(HttpServletRequest request, SigpathSubmission submission) Stores XML Submission to Current Session.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

extractReaction

public static Reaction extractReaction(SigpathSubmission submission)

Extracts the Correct Reaction Object.

extractEnzymaticReaction

public static EnzymaticReaction extractEnzymaticReaction(SigpathSubmission submission)

Extracts First Enzymatic Reaction out of XML Document; returns null if Enzymatic Reaction is not found.

extractPathway

public static Pathway extractPathway(SigpathSubmission submission)

Extracts the Correct Pathway Object.

getSubmissionFromSession

public static SigpathSubmission getSubmissionFromSession(HttpServletRequest request)

Gets XML Submission from Current Session.

storeSubmissionToSession

public static void storeSubmissionToSession(HttpServletRequest request,
                                            SigpathSubmission submission)

Stores XML Submission to Current Session.

getInteractionTypeFromSession

public static String getInteractionTypeFromSession(HttpServletRequest request)

Gets Interaction Type from Session.

storeInteractionTypeToSession

public static void storeInteractionTypeToSession(HttpServletRequest request,
                                                 String interactionType)

Stores Interaction Type to Session.

isPhosphorylationRxn

public static boolean isPhosphorylationRxn(HttpServletRequest request)

Is the User Creating a Phoshporylation Reaction.

isDePhosphorylationRxn

public static boolean isDePhosphorylationRxn(HttpServletRequest request)

Is the User Creating a De-Phoshporylation Reaction.

isEnzymatic

public static boolean isEnzymatic(HttpServletRequest request)

Is the User Creating an Enzymatic Reaction.

isBinding

public static boolean isBinding(HttpServletRequest request)

Is the User Creating a Binding Reaction.