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Constant Field Values

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org.sigpath.*

org.sigpath.action.ActionRoot
protected static final String ERROR "error"
protected static final String FAILURE "failure"
protected static final String NOT_AUTHENTICATED "not_authenticated"
protected static final String SESSION_XDEBUG "xdebug"
protected static final String SIGPATH_MAINPAGE "/mainMenu.action"
protected static final String SUCCESS "success"

org.sigpath.action.TurnXDebugOn_Off
public static final String ON "on"
public static final String XDEBUG "xdebug"

org.sigpath.action.ViewDetails
public static final String EDIT_PARAM "edit"
public static final int EDIT_VIEW 4
public static final String HTML_PARAM "html"
public static final int HTML_VIEW 3
public static final int STANDARD_VIEW 1
public static final String XML_PARAM "xml"
public static final int XML_VIEW 2

org.sigpath.action.ViewModelImageYFiles
public static final String ALL "all"
public static final String GIF "gif"
public static final String JPEG "jpg"
public static final String SVG "svg"

org.sigpath.action.biowizard.CreateReaction
public static final String SESSION_BIOPOLYMERS "biopolymers"
public static final String SESSION_INTERACTION_TYPE "interaction_type"
public static final String SESSION_LEFT_ORDER "left_order"
public static final String SESSION_RIGHT_ORDER "right_order"
public static final String SESSION_XML_SUBMISSION "sp_submission"

org.sigpath.action.review.GetAllPendingReviews
public static final String CREATE_SAMPLE_DATA "create_sample_data"
public static final String DELETE_SAMPLE_DATA "delete_sample_data"

org.sigpath.admin.Admin
public static final String BUTTON_CONVERT_BID "convert_bid"
public static final String BUTTON_CONVERT_CHEM_INPUT "convert_chem_input"
public static final String BUTTON_CONVERT_VMAX "convert_vmax"
public static final String BUTTON_EXPORT_MODEL_TO_SBML "export_model_to_sbml"
public static final String BUTTON_EXPORT_MODIFIED "export_modified"
public static final String BUTTON_EXPORT_STANDALONE_MODEL "export_standalone_model"
public static final String BUTTON_EXPORT_XML "export_xml"
public static final String BUTTON_IMPORT_MODIFIED "import_modified"
public static final String BUTTON_IMPORT_XML "import_xml"

org.sigpath.admin.AdminTaskRouter
public static final String BUTTON_CONVERT_CHEM "convert_chem"

org.sigpath.admin.ChemicalConverter
public static final String BUTTON_CONVERT_CHEM "convert_chem"

org.sigpath.admin.SpidChooser
public static final int APPROVE_OPTION 1
public static final int OPTION_APPROVE 1
public static final int OPTION_CANCEL 0

org.sigpath.bioimport.GenewaysSBMLImport
public static final String NO_AC "none"

org.sigpath.bioimport.reaction2.types.KineticTypeType
public static final int ORG_SIGPATH_DATAMODEL_KINETICCUSTOM_TYPE 2
public static final int ORG_SIGPATH_DATAMODEL_KINETICMASSACTION_TYPE 0
public static final int ORG_SIGPATH_DATAMODEL_KINETICMICHAELISMENTEN_TYPE 1

org.sigpath.bioimport.reaction2.types.TypeType
public static final int PROTEIN_TYPE 0
public static final int SMALL_MOLECULE_TYPE 1

org.sigpath.bioimport.reaction2.types.UnitType
public static final int ATOMS_L_TYPE 21
public static final int ATOMS_TYPE 40
public static final int L_SEC_1_TYPE 38
public static final int L_TYPE 22
public static final int M_1_MIN_1_TYPE 13
public static final int M_1_SEC_1_TYPE 8
public static final int M_2_MIN_1_TYPE 19
public static final int M_2_SEC_1_TYPE 14
public static final int M_MIN_1_TYPE 35
public static final int M_SEC_1_TYPE 32
public static final int M_TYPE 25
public static final int MICROM_1_MIN_1_TYPE 12
public static final int MICROM_1_SEC_1_TYPE 11
public static final int MICROM_2_MIN_1_TYPE 18
public static final int MICROM_2_SEC_1_TYPE 17
public static final int MICROMOL_S_TYPE 28
public static final int MICROMOL_SEC_TYPE 29
public static final int MICROMOLES_L_TYPE 5
public static final int MICROMOLES_S_TYPE 30
public static final int MICROMOLES_SEC_TYPE 1
public static final int MILLIM_1_MIN_1_TYPE 10
public static final int MILLIM_1_SEC_1_TYPE 9
public static final int MILLIM_2_MIN_1_TYPE 16
public static final int MILLIM_2_SEC_1_TYPE 15
public static final int MILLIMOLES_L_TYPE 20
public static final int MIN_1_TYPE 7
public static final int MM_MIN_1_TYPE 37
public static final int MM_SEC_1_TYPE 34
public static final int MM_TYPE 27
public static final int MOL_L_TYPE 2
public static final int MOL_S_TYPE 26
public static final int MOL_SEC_TYPE 0
public static final int MOL_TYPE 3
public static final int MOLAR_TYPE 31
public static final int SEC_1_TYPE 6
public static final int SEC_TYPE 4
public static final int UL_SEC_1_TYPE 39
public static final int UL_TYPE 23
public static final int UM_1_SEC_1_TYPE 41
public static final int UM_MIN_1_TYPE 36
public static final int UM_SEC_1_TYPE 33
public static final int UM_TYPE 24

org.sigpath.bioimport.sbml.types.UnitKind
public static final int AMPERE_TYPE 0
public static final int BECQUEREL_TYPE 1
public static final int CANDELA_TYPE 2
public static final int CELSIUS_TYPE 3
public static final int COULOMB_TYPE 4
public static final int DIMENSIONLESS_TYPE 5
public static final int FARAD_TYPE 6
public static final int GRAM_TYPE 7
public static final int GRAY_TYPE 8
public static final int HENRY_TYPE 9
public static final int HERTZ_TYPE 10
public static final int ITEM_TYPE 11
public static final int JOULE_TYPE 12
public static final int KATAL_TYPE 13
public static final int KELVIN_TYPE 14
public static final int KILOGRAM_TYPE 15
public static final int LITRE_TYPE 16
public static final int LUMEN_TYPE 17
public static final int LUX_TYPE 18
public static final int METRE_TYPE 19
public static final int MOLE_TYPE 20
public static final int NEWTON_TYPE 21
public static final int OHM_TYPE 22
public static final int PASCAL_TYPE 23
public static final int RADIAN_TYPE 24
public static final int SECOND_TYPE 25
public static final int SIEMENS_TYPE 26
public static final int SIEVERT_TYPE 27
public static final int STERADIAN_TYPE 28
public static final int TESLA_TYPE 29
public static final int VOLT_TYPE 30
public static final int WATT_TYPE 31
public static final int WEBER_TYPE 32

org.sigpath.database.SigPathDatabaseException
public static final int CLASS_CAST_EXCEPTION 1
public static final int NO_SUCH_OBJECT_EXCEPTION 2
public static final int SPID_DOES_NOT_EXIST 0

org.sigpath.database.UnitManager
public static final String ATOMS_NAME "atoms"
public static final int CENTI_COEF -2
public static final String CENTI_NAME "centi"
public static final String CONCENTRATION_IS_NAME "mol/l"
public static final int DECI_COEF -1
public static final String DECI_NAME "deci"
public static final int DEFAULT_EXPONENT 1
public static final int DEFAULT_MULTIPLIER 1
public static final int DEFAULT_SCALE 0
public static final double ERROR_CONSTANT 9999999.0
public static final String EXPONENT_NAME "exponent"
public static final String FIRST_ORDER_IS_NAME "sec-1"
public static final int GIGA_COEF 6
public static final String GIGA_NAME "giga"
public static final int L_CODE 2
public static final int MICRO_COEF -6
public static final String MICRO_LITER "ul"
public static final String MICRO_MOLAR_NAME "uM"
public static final String MICRO_NAME "micro"
public static final String microSecondOrderRef "microM-1.sec-1"
public static final String microThirdOrderRef "microM-2.sec-1"
public static final int MILLI_COEF -3
public static final String MILLI_MOLAR_NAME "mM"
public static final String MILLI_NAME "milli"
public static final String MINUTE_NAME "min"
public static final String MOLAR_NAME "M"
public static final int MOLE_CODE 1
public static final String MULTIPLIER_NAME "multiplier"
public static final int NEUTRAL_SCALE_COEF 0
public static final String RATE_IS_NAME "mol/sec"
public static final String SCALE_NAME "scale"
public static final int SEC_CODE 3
public static final String SECOND_ORDER_IS_NAME "M-1.sec-1"
public static final String SUBSTANCE_REF_NAME "mol"
public static final String THIRD_ORDER_IS_NAME "M-2.sec-1"
public static final String TIME_REF_NAME "sec"
public static final String VELOCITY_IS_NAME "M.sec-1"
public static final String VOLUME_REF_NAME "l"

org.sigpath.database.Units
public static final double AVOGADRO_CONSTANT 6.02214199E23
public static final String concRef "mol/l"
public static final String firstOrderRef "sec-1"
public static final int firstOrderValue 1
public static final String rateRef "mol/sec"
public static final String secondOrderRef "M-1.sec-1"
public static final int secondOrderValue 2
public static final String subsRef "mol"
public static final String thirdOrderRef "M-2.sec-1"
public static final int thirdOrderValue 3
public static final String timeRef "sec"
public static final String velocityRef "M.sec-1"
public static final String volumeRef "l"

org.sigpath.datamodel.Databases
public static final String AARHUS_GHENT "Aarhus/Ghent-2DPAGE"
public static final String ANU_2DPAGE "ANU-2DPAGE"
public static final String ARAC_XYLS "AraC-XylS"
public static final String BLOCKS "BLOCKS"
public static final String COMPLUYEAST_2DPAGE "COMPLUYEAST-2DPAGE"
public static final String DDBJ "DDBJ"
public static final String DICTYDB "DictyDb"
public static final String DIP "DIP"
public static final String ECO2DBASE "ECO2DBASE"
public static final String ECOCYC "EcoCyc"
public static final String ECOGENE "EcoGene"
public static final String EMBL "EMBL"
public static final String ENSEMBLE "Ensembl"
public static final String ENZYME "ENZYME"
public static final String ENZYME_COMMISSION "ec"
public static final String FLYBASE "FlyBase"
public static final String GCRDB "GCRDb"
public static final String GENBANK "gb"
public static final String GENECARDS "GeneCards"
public static final String GENECENSUS "GeneCensus"
public static final String GENELYNX "GeneLynx"
public static final String GENEWAYS "Geneways"
public static final String GLYCOSUITEDB "GlycoSuiteDB"
public static final String GPCRDB "GPCRDB"
public static final String GRAMENE "Gramene"
public static final String HIV "HIV"
public static final String HSC_2DPAGE "HSC-2DPAGE"
public static final String HSSP "HSSP"
public static final String HUGE "HUGE"
public static final String IMGT "IMGT"
public static final String INTERPRO "InterPro"
public static final String LEPROMA "Leproma"
public static final String LISTILIST "ListiList"
public static final String MAIZE_2DPAGE "MAIZE-2DPAGE"
public static final String MAIZEDB "MaizeDB"
public static final String MENDEL "Mendel"
public static final String MEROPS "MEROPS"
public static final String MGD "MGD"
public static final String MICADO "Micado"
public static final String MIM "MIM"
public static final String MODBASE "ModBase"
public static final String MYPULIST "MypuList"
public static final String NCIOPEN "nico"
public static final String NRSUB "NRSub"
public static final String NUCLEARDB "NucleaRDB"
public static final String PDB "PDB"
public static final String PFAM "Pfam"
public static final String PHCI_2DPAGE "PHCI-2DPAGE"
public static final String PIR "PIR"
public static final String PMMA_2DPAGE "PMMA-2DPAGE"
public static final String PRESAGE "PRESAGE"
public static final String PRINTS "PRINTS"
public static final String PRODOM "ProDom"
public static final String PROSITE "PROSITE"
public static final String PROTOMAP "ProtoMap"
public static final String REBASE "REBASE"
public static final String SGD "SGD"
public static final String SIENA_2DPAGE "Siena-2DPAGE"
public static final String SIGPATH "sigpath"
public static final String SMART "SMART"
public static final String SOURCE "SOURCE"
public static final String STYGENE "StyGene"
public static final String SUBTILIST "SubtiList"
public static final String SWISS_2DPAGE "SWISS-2DPAGE"
public static final String SWISSPROT "sw"
public static final String TIGR "TIGR"
public static final String TIGRFAMS "TIGRFAMs"
public static final String TRANSFAC "TRANSFAC"
public static final String TUBERCULIST "TubercuList"
public static final String WORMPEP "WormPep"
public static final String YPD "YPD"
public static final String ZFIN "ZFIN"

org.sigpath.datamodel.EnzymaticReaction
public static final int DIRECTION_IRREVERSIBLE 2
public static final int DIRECTION_PHYSIOLOGICALLY_UNIDIRECTIONAL 3
public static final int DIRECTION_REVERSIBLE 1

org.sigpath.datamodel.KineticMassAction
public static final int INIT_CHEMICAL_INDEX 1
public static final String KB "KB"
public static final String KB_DESCRIPTION "Backward rate"
public static final String KF "KF"
public static final String KF_DESCRIPTION "Forward rate"
public static final String NDY "not_defined_yet"
public static final String P_PREFIX "p"
public static final String R_PREFIX "r"
public static final String VOLUME_NAME "v"

org.sigpath.datamodel.KineticMichaelisMenten
public static final String EVMAX "VMax_EnzymeConcentration"
public static final String EVMAX_DESCRIPTION "Enzyme Concentration at which the VMax was measured."
public static final String K1 "k1"
public static final String K2 "k2"
public static final String K3 "k3"
public static final String KB "kb"
public static final String KBKP "KBKP"
public static final String KBKP_DESCRIPTION "Ratio of KB over KP."
public static final String KF "kf"
public static final String KM "KMichaelis"
public static final String KM_DESCRIPTION "Michaelis constant."
public static final String KP "Kp"
public static final String KP_DESCRIPTION "rate constant for the breakdown of ES to E+P"
public static final String NDY "not_defined_yet"
public static final String SUBSTRATE "S"
public static final String SUBSTRATE_DESCRIPTION "Substrate"
public static final String VMAX "VMax"
public static final String VMAX_DESCRIPTION "Maximum velocity of the reaction."

org.sigpath.datamodel.kinetic.BindingDeclaration
public static final int CHEMICAL_CODE 1
public static final int CONSTANT_CODE 2
public static final int UNDEFINED_CODE 3

org.sigpath.form.SpecifyModel
public static final String PAGE_SAVE_MODEL "save_model"
public static final String PAGE_SET_CONCENTRATIONS "set_concentrations"
public static final String PAGE_START_WIZARD "page_start_wizard"

org.sigpath.form.SpecifyPathway
public static final String PAGE_ADD_REACTION "add_reaction"
public static final String PAGE_REMOVE_REACTION "remove_reaction"
public static final String PAGE_RESET_SESSION "reset_session"
public static final String PAGE_SAVE_PATHWAY "save_pathway"
public static final String PAGE_SET_NAME_DESCRIPTION "set_name_description"

org.sigpath.form.SpecifyReactionSearch
public static final String FORMAT_VIEW_ONLY "view_only"
public static final String FORMAT_WIZARD "wizard"
public static final String SEARCH_ALL_REACTIONS "all_reactions"
public static final String SEARCH_COMPLEXES "complexes"
public static final String SEARCH_ENZYMATIC_REACTIONS "enzymatic_reactions"
public static final String SEARCH_NAMED_CHEMICAL_INTERACTIONS "named_chemical_interactions"
public static final String SEARCH_NAMED_CHEMICALS "named_chemicals"
public static final String SEARCH_PROTEINS "proteins"
public static final String SEARCH_REACTIONS "reactions"
public static final String SEARCH_SMALL_MOLECULES "small_molecules"

org.sigpath.fulltext.LuceneFullTextSearchManager
public static final String DELIMITERS " \t,.()-[]:\"\'&"

org.sigpath.model.Model
public static final String MODEL_COMPUTED "MODEL_COMPUTED"

org.sigpath.model.PagedCollection
public static final int RESULTS_PER_PAGE 10

org.sigpath.model.XDebugParameter
public static final int COOKIE_TYPE 0
public static final int ENVIRONMENT_TYPE 3
public static final int HTTP_HEADER_TYPE 5
public static final int HTTP_TYPE 4
public static final int INTERNAL_TYPE 2
public static final int SESSION_TYPE 6
public static final int USER_TYPE 1

org.sigpath.navigator.controllers.MainViewController
public static final String ACTION_CLOSE_REFERENCES_PANEL "Close References Panel"
public static final String ACTION_CLOSE_SUBMISSION_ERRORS_PANEL "Close Submission Errors Panel"
public static final String ACTION_CLOSE_SUBMISSION_PANEL "Close Submission Panel"
public static final String ACTION_DOWNLOAD_REFERENCES "Download References"
public static final String ACTION_EDIT_ADD_SPID "Edit/AddSpid"
public static final String ACTION_HELP_ABOUT "Help/About"
public static final String ACTION_LAYOUT_CIRCULAR "Layouter/Circular"
public static final String ACTION_LAYOUT_HIERARCHIC "Layouter/Hierarchic"
public static final String ACTION_LAYOUT_ORGANIC "Layouter/Organic"
public static final String ACTION_LAYOUT_ORTHOGONAL "Layouter/Orthogonal"
public static final String ACTION_SAVE_XML "SigPath/Save Submission to XML file"
public static final String ACTION_SIGPATH_CONNECT "SigPath/Connect"
public static final String ACTION_SIGPATH_EXIT "SigPath/Exit"
public static final String ACTION_SIGPATH_LOGIN "SigPath/Login"
public static final String ACTION_SIGPATH_LOGOUT "SigPath/Logout"
public static final String ACTION_SIGPATH_SUBMIT "SigPath/Submit Entities To SigPath Step 1"
public static final String ACTION_SUBMIT_TO_SIGPATH "SigPath/Submit Entities To SigPath Step 2"
public static final String ACTION_VIEW_CLEAR_NODES "View/ClearNodes"
public static final String ACTION_VIEW_COMPACT "View/Compact"
public static final String ACTION_VIEW_EXPAND "View/Expand"
public static final String ACTION_VIEW_FIT_IN_WINDOW "View/FitInWindow"
public static final String ACTION_ZOOM_IN "Zoom in graph"
public static final String ACTION_ZOOM_OUT "Zoom out graph"
public static final String ACTION_ZOOM_RESET "Zoom reset graph"

org.sigpath.navigator.mapping.CompactNodesMapping
public static final int ARROW 4
public static final int ARROW_CUSTOM 7
public static final int ARROW_ENZYMATIC 6
public static final int ARROW_MASSACTION 5
public static final int COMPLEX 4
public static final int CONC 7
public static final int CONCEDGE 10
public static final int ENZYME 5
public static final int ENZYMEEDGE 8
public static final int ENZYMEEDGE_BLUR 9
public static final int EREACTION 1
public static final int NAMEDCHEMICAL 6
public static final int NOARROW 0
public static final int NOARROW_CUSTOM 3
public static final int NOARROW_ENZYMATIC 2
public static final int NOARROW_MASSACTION 1
public static final int PENDINGLIST 8
public static final int PROTEIN 2
public static final int REACTION 0
public static final int SMALLMOL 3

org.sigpath.navigator.util.NavigatorConstants
public static final String BACKWARD_REFERENCES_TAB_TITLE "Backward References"
public static final String CHANGE_INSTANCE_ADDRESS "Update SigPath instance address label"
public static final String CHANGE_NEW_SPID "New Spid"
public static final String CHANGE_YEDGE_SELECTED "YEdge Selected"
public static final String CHANGE_YNODE_SELECTED "YNode Selected"
public static final String CIRCULAR_LAYOUT "Circular Layout"
public static final String COMPACT_MAPPING "Compact Mapping"
public static final String COOKIE_ID "id"
public static final String DEFAULT_LAYOUT "Hierarchic Layout"
public static final String DEFAULT_MAPPING "Compact Mapping"
public static final double DEFAULT_ZOOM 1.0
public static final String DELETE_ERROR_PREFIX "Deletion error"
public static final String DELETE_FROM_SIGPATH_DB "Delete from SigPath DB"
public static final int DELETE_QUOTA 1000
public static final String DISPLAY_USERNAME "Display username"
public static final String EDIT_PATHWAY_PROPERTIES "Edit pathway properties"
public static final String EXPAND_MAPPING "Expand Mapping"
public static final String GOT_SUBMISSION_ERRORS "Got Submission Errors"
public static final String HIERARCHIC_LAYOUT "Hierarchic Layout"
public static final int MENU_SIGPATH_SUBMIT 2
public static final int MENU_SUBMIT_TO_SIGPATH 3
public static final String ORGANIC_LAYOUT "Organic Layout"
public static final String ORTHOGONAL_LAYOUT "Orthogonal Layout"
public static final int POPUP_DELETE_FROM_DB 1
public static final String REDRAW_GRAPH "Redraw graph"
public static final String REDRAW_LAYOUT "Redraw layout"
public static final String REDRAW_MAPPING "Redraw mapping"
public static final String REDRAW_ZOOM "Redraw zoom"
public static final String REFRESH_BACKWARD_REFERENCES "Refresh Backward References Panel"
public static final String REFRESH_SUBMISSION_PANEL "Refresh Submission Panel"
public static final String REMOVE_USERNAME "Remove username"
public static final String SUBMISSION_ERRORS_TAB_TITLE "Submission Errors"
public static final String SUBMISSION_TAB_TITLE "Submission List"
public static final String SUBMIT_RESULT "Submit result"

org.sigpath.tapestry.Visit
public static final String PAGE_MAIN_MENU "mainMenu.action"

org.sigpath.tapestry.model.XMLModelFacade
public static final int MAX_GENERATED_REACTION_NUMBER 1000

org.sigpath.tapestry.pages.model.ChooseSBMLExportOptionsPage
public static final String STR_SBML_L1_V1 "L1v1"
public static final String STR_SBML_L1_V2 "L1v2"
public static final String STR_SBML_L2_V1 "L2v1"

org.sigpath.tapestry.services.ViewModelImageService
public static final int PARAM_COMPACT_COMPLEX_VIEW 4
public static final int PARAM_COMPACT_ENZYME_VIEW 3
public static final int PARAM_IMAGE_TYPE 1
public static final int PARAM_LAYOUTER 2
public static final int PARAM_SHOW_ATP_ADP 5
public static final int PARAM_SPID 0
public static final int PARAMS_COUNT 6
public static final String SERVICE_NAME "viewModelImageService"

org.sigpath.tapestry.util.CompartmentNameModel
public static final String All_Users "All_Users"

org.sigpath.tapestry.util.OrganismModel
public static final String ALL "Search All Organisms"
public static final String OTHER "Other (please specify.)"

org.sigpath.tapestry.util.UserNameModel
public static final String ALL_USERS "All_Users"

org.sigpath.task.TSearchMolecules
public static final String AC_TARGET "ac:"
public static final String ALL_TARGET "all"
public static final String SPID_TARGET "spid:"

org.sigpath.task.TSearchTask
public static final int IGNORE_START_INDEX -1

org.sigpath.task.diagrams.GraphTechnology
public static final String FORMAT_GIF "gif"
public static final String FORMAT_GML "gml"
public static final String FORMAT_JPEG "jpg"
public static final String FORMAT_SVG "svg"

org.sigpath.task.diagrams.TViewImageYFiles
public static final int ARROW 1
public static final int ARROW_NCI 4
public static final int COMPLEX 4
public static final int ENZYME 5
public static final int ENZYMEEDGE 2
public static final int EREACTION 1
public static final int INTERACTIONEDGE 3
public static final int NAMEDCHEMICAL 6
public static final int NOARROW 0
public static final int NOARROW_NCI 5
public static final int PROTEIN 2
public static final int REACTION 0
public static final int SMALLMOL 3

org.sigpath.task.edit.TImportModifiedEntities
public static final String COMMENT_DELIM "#"

org.sigpath.task.model.TSBMLModelExport
protected static final int ACCROSS_TWO_COMPARTMENTS 1
protected static final int K1 4
protected static final int K2 5
protected static final int K3 6
protected static final int KB 1
protected static final int KBKP 3
protected static final int KF 0
protected static final int KM 0
protected static final int KP 2
protected static final int VMAX 1
protected static final int WITHIN_A_COMPARTMENT 0

org.sigpath.task.review.SampleReviewData
public static final int CREATE_DATA 1
public static final int DELETE_DATA 2
public static final String JUNIT_DESCRIPTION_DONE "junit_review_done"
public static final String JUNIT_DESCRIPTION_NEW "junit_review_new"
public static final String JUNIT_USER_NAME "junit_temp"
public static final String JUNIT_USER_PASSWORD "password"

org.sigpath.task.review.TAddChemicals
public static final int FOURWEEKS 28
public static final int ONEWEEK 7
public static final int SINCE_BEGINNING -1
public static final int TODAY 0
public static final int TWOWEEKS 14

org.sigpath.task.review.TAddReactions
public static final int FOURWEEKS 28
public static final int ONEWEEK 7
public static final int SINCE_BEGINNING -1
public static final int TODAY 0
public static final int TWOWEEKS 14

org.sigpath.task.review.TUpdatePendingList
public static final int ACTION_MARK_REVIEWED 1

org.sigpath.task.util.BaseTask
protected static final String SEPARATOR "_"

org.sigpath.task.xml.TCoreTasks
public static final boolean DO_NOT_ESCAPE false
public static final boolean ESCAPE_XML true

org.sigpath.task.xml.TExportModels
protected static final String IDPREFIX "MODEL"

org.sigpath.util.Base64
public static final boolean DECODE false
public static final boolean ENCODE true

org.sigpath.util.GlobalForwards
public static final String ADMINTOOLS "/jsp/admin/ChangeDBStatus.jsp"
public static final String ERRORPAGE "/jsp/Error.jsp"
public static final String LOGIN "/jsp/LoginFromMainMenu.jsp"
public static final String MAINMENU "/jsp/MainMenu.jsp"
public static final String MAINMENUACTION "/mainMenu.action"

org.sigpath.util.PropertyManager
public static final int DB_FULLACCESS 1
public static final int DB_OFFLINE 3
public static final int DB_READONLY 2
public static final int DB_UNSET 0

org.sigpath.util.SigPathConstants
public static final String ADMINUSERNAME "admin"
public static final String ADP_AC "20267"
public static final String ATP_AC "39084"
public static final String BID "BID"
public static final String BID_PREFIX "bid"
public static final String CURRENT_RANGE "CurrentRange"
public static final String DBSTATUSFILE "dbstatus.txt"
public static final String DEFAULT_JDO_EXTENSION "true"
public static final String DEFAULT_JDO_PERSISTENCE_MANAGER "com.poet.jdo.PersistenceManagerFactories"
public static final String DEFAULT_NAVIGATOR_DELETE_LOG_VALUE "c:/dev/sigpath/navigator-delete-log"
public static final String ER_AC_INDEX_NAME "ER_ACIndex"
public static final String GENERATOR_WEB_SERVICE_ADDR "http://localhost:8080/sigpath/services/generator"
public static final String GENERATOR_WEB_SERVICE_PARAM "generatorWebServiceAddr"
public static final String GRAPH_TECH_YFILES "YFiles"
public static final long INVALIDSPID -999999L
public static final String IS_INDEXED_INDEX_NAME "SPE_IsIndexedIndex"
public static final String KEYWORD_INVERTED_INDEX_NAME "BINDING_KeywordInvertedIndex"
public static final String KEYWORDSEARCH_JDO "JDO"
public static final String KEYWORDSEARCH_LUCENE "Lucene"
public static final String KEYWORDSEARCH_ORACLE "Oracle"
public static final String KINETICENZYMATIC_NAME "Michaelis-Menten kinetic"
public static final String KINETICMASSACTION_NAME "Mass-action kinetic"
public static final String MODIFIED_ENTITY_LIST "MODIFIED_ENTITY_LIST"
public static final String NAMEDCHEMICALINTERACTIONCLASS "org.sigpath.datamodel.NamedChemicalInteraction"
public static final String NEXT_AVAILABLE_RANGE "NextAvailableRange"
public static final String ORACLE_CONNECT_STRING "jdbc:oracle:thin:@klee.med.cornell.edu:1521:SIGPATH"
public static final String ORACLE_DRIVER_CLASS_NAME "oracle.jdbc.driver.OracleDriver"
public static final String ORACLE_KEYWORD_TABLE_FIELDS "(SPID VARCHAR2(128), ENTITY_CLASS_NAME VARCHAR2(300),SPECIES VARCHAR2(1000), COMMON_NAME VARCHAR2(1000), DESCRIPTION VARCHAR2(2000), PRIMARY KEY (SPID) ) "
public static final int ORACLE_MAX_KEYWORD_LENGTH 2000
public static final int ORACLE_MAX_SPECIES_COMMONNAME_LENGTH 1000
public static final int ORACLE_TABLE_EXISTS_ERRORCODE 955
public static final int ORACLE_UNIQUE_CONSTRAINT_VIOLATED 1
public static final String ORACLE_USER_NAME ""
public static final String ORACLE_USER_PASSWORD ""
public static final String PHOSPHATE_AC "local_pi"
public static final String PROP_NAME_BUILD_VERSION "org.sigpath.build.version"
public static final String PROP_NAME_CURRENT_SIGPATH_ENGINE "sigpath"
public static final String PROP_NAME_FO_LICENSE "com.fastobjects.license"
public static final String PROP_NAME_GRAPH_TECHNOLOGY "org.sigpath.graph.technology"
public static final String PROP_NAME_JDO_CONNECTION_URL "javax.jdo.option.ConnectionURL"
public static final String PROP_NAME_JDO_DRIVERNAME "javax.jdo.option.ConnectionDriverName"
public static final String PROP_NAME_JDO_EXTENSION "javax.jdo.Extension"
public static final String PROP_NAME_JDO_MAXPOOL "javax.jdo.option.MaxPool"
public static final String PROP_NAME_JDO_MINPOOL "javax.jdo.option.MinPool"
public static final String PROP_NAME_JDO_PASSWORD "javax.jdo.option.ConnectionPassword"
public static final String PROP_NAME_JDO_PERSISTENCE_MANAGER "javax.jdo.PersistenceManagerFactoryClass"
public static final String PROP_NAME_JDO_USERNAME "javax.jdo.option.ConnectionUserName"
public static final String PROP_NAME_KEYWORD_SEARCH_METHOD "keywordSearchMethod"
public static final String PROP_NAME_LUCENE_INDEX_DIRECTORY "org.sigpath.fulltext.lucene.index.directory"
public static final String PROP_NAME_NAVIGATOR_DELETE_LOG "navigator.delete.log"
public static final String PROP_NAME_NAVIGATOR_JAVA_VERSION "navigator.java.version"
public static final String PROP_NAME_ORACLE_CONNECT_STRING "oracleConnectString"
public static final String PROP_NAME_ORACLE_TABLE_NAME_SUFFIX "oracleTableNameSuffix"
public static final String PROP_NAME_SCHEMA_URL "schema.url"
public static final String PROP_NAME_SIGPATH_BUILD_DATE "org.sigpath.build.date"
public static final String PROP_NAME_SIGPATH_BUILD_TIME "org.sigpath.build.timestamp"
public static final String PROTEIN "protein"
public static final String SCHEMA_URL "default"
public static final String SMALLMOLECULE "small-molecule"
public static final String SPID "SPID"
public static final String SPID_PREFIX "sp"
public static final String SPIDRANGE_BEGIN_PARAM "beginSpidRange"
public static final String SPIDRANGE_BEGIN_PREFIX "BEGINSPID:"
public static final String SPIDRANGE_END_PARAM "endSpidRange"
public static final String SPIDRANGE_END_PREFIX "ENDSPID:"
public static final String SPIDRANGE_PARAM "spidRange"
public static final String TIMERLOG "sigpathTimer.log"
public static final String VIEWXML "XML"
public static final String WATER_AC "147337"

org.sigpath.util.UIConstants
public static final String ALIAS_INDEX_PARAM "aliasIndex"
public static final String ALIAS_PARAM "alias"
public static final String CIRCULAR_LAYOUTER "Circular"
public static final String CONFIRM_PARAM "confirm"
public static final int DB_FULLACCESS 1
public static final int DB_OFFLINE 3
public static final int DB_READONLY 2
public static final int DB_UNSET 0
public static final String DBSTATUS "dbStatus"
public static final String DEFAULT_LAYOUTER "Default"
public static final String DESC_PARAM "desc"
public static final String EDIT_PARAM "edit"
public static final String GIF "GIF"
public static final String HIERARCHIC_LAYOUTER "Hierarchic"
public static final String HTML_PARAM "html"
public static final String JPEG "JPG"
public static final String LEVEL_1 "Level 1: Display primary nodes"
public static final String LEVEL_2 "Level 2: Display primary and secondary nodes"
public static final String NAME_PARAM "name"
public static final String ORGANIC_LAYOUTER "Organic"
public static final String ORTHOGONAL_LAYOUTER "Orthogonal"
public static final int PAGE_ID_CONFIRM_REACTION_BINDING 10
public static final int PAGE_ID_CONFIRM_REACTION_DEFAULT 9
public static final int PAGE_ID_CONFIRM_REACTION_PHOSP 11
public static final int PAGE_ID_SELECT_ENZYME_REQUIRED 5
public static final int PAGE_ID_SELECT_INTERACTION_TYPE 0
public static final int PAGE_ID_SELECT_MOLECULE_DEFAULT 1
public static final int PAGE_ID_SELECT_REACTANTS_PROCEED 3
public static final int PAGE_ID_SELECT_REACTANTS_REQUIRED 2
public static final int PAGE_ID_SELECT_SUBSTRATE_REQUIRED 4
public static final int PAGE_ID_SPECIFY_REACTION_PARAMETERS_BINDING 7
public static final int PAGE_ID_SPECIFY_REACTION_PARAMETERS_DEFAULT 6
public static final int PAGE_ID_SPECIFY_REACTION_PARAMETERS_PHOSPH 8
public static final String PENDINGLISTSPID "stPendingListSpid"
public static final String REACTION_SIDE_ENZYME "enzyme"
public static final String REACTION_SIDE_LEFT "left"
public static final String REACTION_SIDE_RIGHT "right"
public static final String SEARCH_ALL_CHEMS "searchAllChems"
public static final String SEARCH_ALL_MODIFIED_CHEMS "searchAllModifiedChems"
public static final String SEARCH_ALL_REACTIONS "searchAllReactions"
public static final String SEARCH_COMPLEXES "complexes"
public static final String SEARCH_FORMAT_MINI "mini"
public static final String SEARCH_FORMAT_VIEW_ONLY "view_only"
public static final String SEARCH_FORMAT_WIZARD "wizard"
public static final String SEARCH_MOD_COMPLEXES "mod_complexes"
public static final String SEARCH_MOD_NAMED_CHEMICALS "mod_named_chemicals"
public static final String SEARCH_MOD_PROTEINS "mod_proteins"
public static final String SEARCH_MOD_SMALL_MOLECULES "mod_small_molecules"
public static final String SEARCH_NAMED_CHEMICALS "named_chemicals"
public static final String SEARCH_PROTEINS "proteins"
public static final String SEARCH_SMALL_MOLECULES "small_molecules"
public static final String SPEC_MOD_ENTITY_PARAM "specifyModifiedEntity"
public static final String SPID_PARAM "spid"
public static final String SUBMISSION_REQ_ATTRIB "sp_submission"
public static final String SVG "SVG"
public static final String TASK_PARAM "task"
public static final String TYPE_BINDING "binding"
public static final String TYPE_DE_PHOSPH "de-phosphorylation"
public static final String TYPE_PHOSPH "phosphorylation"
public static final String VIEW_PARAM "view"
public static final String XML_PARAM "xml"

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