institute for computational biomedicine: SRS

[ description ]

SRS is short for "Sequence Retrieval System", a browser for databases in molecular biology.

SRS, developed by Thure Etzold of EMBL, is a data retrieval system that integrates heterogeneous databanks in molecular biology and and genome analysis. It enables the querying of diverse biological and Life Science data through only one interface. A few of its capabilities include integration of public and proprietary data through one interface, unique ability to perform cross-database queries, and rapid string searches of large volumes of data.

SRS can be used as a standalone unix program under the name getz. getz allows you to search and extract data from any SRS-indexed database in a choice of formats. It also allows you to use links to extract entries in one database that match those you have found in another database.

[ documentation ]

Version 7.1 is currently installed in our system. The User Guide provided by the Author and "example usage" excerpted from this User Guide are below.

Example Usage

User Guide

Available Databanks

[ availability ]

SRSlocal installation [ access SRS]

News

Jul, 2009; ChIPseeqer, a comprehensive framework for analysis of ChIP-seq data developed in the Elemento lab, is now available for download. [More]
Apr, 2009; The BDVal program developed by the Campagne laboratory for MAQC-II is now available from http://bdval.org. The software supports the development and evaluation of predictive biomarker models from high-throughput data. The web site offers binary and source distributions. [More]
Jan, 2009; Twease now supports searching MEDLINE articles by Author, Journal, and Publication Year. Examples for performing these searches can be found in the updated Twease tutorial. [More]

[News Archives] [Mailing List]

Events

Dec 11th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Fabien Campagne; ICB Conference Room - Y.1301
Jan 15th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Lei Shi; ICB Conference Room - Y.1301
Feb 12th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Christopher E. Mason; ICB Conference Room - Y.1301
Mar 12th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Olivier Elemento; ICB Conference Room - Y.1301
Apr 9th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Emre Aksay; ICB Conference Room - Y.1301
May 14th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Jonathan D. Victor; ICB Conference Room - Y.1301
Jun 11th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Harel Weinstein; ICB Conference Room - Y.1301
Jul 9th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Duane Hassane; ICB Conference Room - Y.1301