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 | [ description ] |
GENSCAN is a general-purpose gene identification program which analyzes genomic DNA sequences from a variety of organisms including human, other vertebrates, invertebrates and plants.
"For each sequence, the program determines the most likely "parse" (gene structure) under a probabilistic model of the gene structural and compositional properties of the genomic DNA for the given organism. This set of exons/genes is then printed to an output file (the text output) together with the corresponding predicted peptide sequences. A graphical (PostScript) output may also be created which displays the location and DNA strand of each predicted exon. Unlike the majority of other currently available gene prediction programs, the model treats the most general case in which the sequence may contain no genes, one gene, or multiple genes on either or both DNA strands and partial
genes as well as complete genes are considered. The most important restrictions are that only protein coding genes are considered (and not tRNA or rRNA genes, for example), and that transcription units are assumed to be non-overlapping."
| [ about the method ] |
Burge, C., Karlin, S. Prediction of complete gene structures in human genomic DNA. 1997. J. Mol. Biol., 268(1):78-94. [Pubmed]
| [ documentation ] |
Version 1.0 is currently installed in our system. The Manual provided by the Author and example usage in our local system are listed below.
| [ availability ] |
GENSCANlocal installation
[ access GENSCAN]
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Jul, 2009; ChIPseeqer, a comprehensive framework for analysis of ChIP-seq data developed in the Elemento lab, is now available for download. [More]
Apr, 2009; The BDVal program developed by the Campagne laboratory for MAQC-II is now available from http://bdval.org. The software supports the development and evaluation of predictive biomarker models from high-throughput data. The web site offers binary and source distributions. [More]
Jan, 2009; Twease now supports searching MEDLINE articles by Author, Journal, and Publication Year. Examples for performing these searches can be found in the updated Twease tutorial. [More]
[News Archives] [Mailing List]
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| | Dec 11th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Fabien Campagne; ICB Conference Room - Y.1301
Jan 15th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Lei Shi; ICB Conference Room - Y.1301
Feb 12th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Christopher E. Mason; ICB Conference Room - Y.1301
Mar 12th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Olivier Elemento; ICB Conference Room - Y.1301
Apr 9th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Emre Aksay; ICB Conference Room - Y.1301
May 14th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Jonathan D. Victor; ICB Conference Room - Y.1301
Jun 11th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Harel Weinstein; ICB Conference Room - Y.1301
Jul 9th; 4:00pm-5:00pm: Institute for Computational Biomedicine Research in Progress Seminar Series - Duane Hassane; ICB Conference Room - Y.1301
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