Hierarchy For All Packages

Package Hierarchies:

edu.mssm.crover.beans, edu.mssm.crover.bturns, edu.mssm.crover.cli, edu.mssm.crover.corba.servers.sequences, edu.mssm.crover.db, edu.mssm.crover.db.object.schema.ims, edu.mssm.crover.db.objectstore, edu.mssm.crover.db.objectstore.util, edu.mssm.crover.db.relational, edu.mssm.crover.domain2d, edu.mssm.crover.domain2d.rbdg, edu.mssm.crover.domain2d.rbdg.layout.xml, edu.mssm.crover.domain2d.rbdg.xml, edu.mssm.crover.domain2d.rbdg.xml.types, edu.mssm.crover.identification, edu.mssm.crover.imports, edu.mssm.crover.ims, edu.mssm.crover.ims.permissions, edu.mssm.crover.ims.permissions.collections, edu.mssm.crover.ims.permissions.test, edu.mssm.crover.ims.submissions, edu.mssm.crover.ims.submissions.collections, edu.mssm.crover.ims.tasks, edu.mssm.crover.ims.tasks.engines, edu.mssm.crover.ims.tasks.groups, edu.mssm.crover.ims.tasks.results, edu.mssm.crover.ims.tasks.rmi, edu.mssm.crover.ims.tasks.tools, edu.mssm.crover.ims.tasks.workers, edu.mssm.crover.ims.test, edu.mssm.crover.ims.update, edu.mssm.crover.ims.users, edu.mssm.crover.ims.users.collections, edu.mssm.crover.ims.users.test, edu.mssm.crover.joe, edu.mssm.crover.joe.tools, edu.mssm.crover.memtest, edu.mssm.crover.mutations.drivers, edu.mssm.crover.mutations.drivers.dimlib, edu.mssm.crover.mutations.drivers.tinygrap, edu.mssm.crover.odmg, edu.mssm.crover.odmg.fastobjects, edu.mssm.crover.odmg.fastobjects.util, edu.mssm.crover.odmg.objectstore, edu.mssm.crover.odmg.objectstore.util, edu.mssm.crover.representation, edu.mssm.crover.scentral, edu.mssm.crover.sigpath.datamodel, edu.mssm.crover.ssedit, edu.mssm.crover.structs, edu.mssm.crover.tables, edu.mssm.crover.tables.readers, edu.mssm.crover.tables.readers.test, edu.mssm.crover.tables.treatments, edu.mssm.crover.tables.writers, edu.mssm.crover.tools, edu.mssm.crover.tools.blast, edu.mssm.crover.tools.blast.parsers, edu.mssm.crover.tools.blast.parsers.xml.v1, edu.mssm.crover.tools.blast.parsers.xml.v2, edu.mssm.crover.tools.blast.parsers.xml.v3, edu.mssm.crover.tools.mapstrength, edu.mssm.crover.tools.regel, edu.mssm.crover.tools.tissue, edu.mssm.crover.tools.tissue.hierarchy, edu.mssm.crover.tools.tissue.xml, edu.mssm.crover.tools.tm, edu.mssm.crover.util, edu.mssm.crover.util.msaviz, edu.mssm.crover.webapps.dimlib, edu.mssm.crover.webapps.dimlib.datamodel, edu.mssm.crover.webapps.dimlib.datamodel.test, edu.mssm.crover.webapps.dimlib.lw, edu.mssm.crover.webapps.dimlib.parsers.xml, edu.mssm.crover.webapps.dimlib.util, edu.mssm.crover.webapps.ims.constants, edu.mssm.crover.webapps.ims.control, edu.mssm.crover.webapps.ims.input, edu.mssm.crover.webapps.ims.input.prototype, edu.mssm.crover.webapps.ims.lw, edu.mssm.crover.webapps.ims.lwtest, edu.mssm.crover.webapps.ims.util, edu.mssm.crover.webapps.tissueinfo, edu.mssm.crover.webapps.tmprop.datamodel, edu.mssm.crover.webapps.tmprop.lw, edu.mssm.crover.webapps.util, edu.mssm.crover.webservices.rbde

Class Hierarchy

• class java.lang.Object
  • class edu.mssm.crover.domain2d.AbstractAnnotationsToDrawings (implements edu.mssm.crover.domain2d.AnnotationsToDrawings)
    • class edu.mssm.crover.domain2d.DiagramAnnotationsToDrawingsImpl
  • class cuttingedge.app.AbstractApplication (implements cuttingedge.app.IApplication)
    • class cuttingedge.app.AbstractSession (implements cuttingedge.app.ISession)
      • class cuttingedge.lw.AbstractServletSession (implements java.io.Serializable)
        • class cuttingedge.lw.ServletSession (implements cuttingedge.lw.FormManager)
          • class edu.mssm.crover.webapps.dimlib.lw.DiMLibServletSession
          • class edu.mssm.crover.webapps.ims.lw.IMSServletSession
          • class edu.mssm.crover.webapps.tmprop.lw.TMPropServletSession
  • class edu.mssm.crover.domain2d.AbstractLoopTemplate (implements edu.mssm.crover.domain2d.LoopTemplate)
    • class edu.mssm.crover.domain2d.AlgorithmicLoopTemplate (implements edu.mssm.crover.domain2d.LoopTemplate)
    • class edu.mssm.crover.domain2d.MultiPointLoopTemplate (implements edu.mssm.crover.domain2d.LoopTemplate)
  • class edu.mssm.crover.ims.tasks.workers.AbstractWorker
    • class edu.mssm.crover.ims.tasks.workers.DirectWorker
    • class edu.mssm.crover.ims.tasks.workers.RMIWorker
  • class edu.mssm.crover.ims.permissions.AccessGroup
  • class edu.mssm.crover.ims.permissions.collections.AccessGroupDirectory
  • class edu.mssm.crover.webapps.dimlib.datamodel.AccessionCode
  • class edu.mssm.crover.ims.permissions.AccessRights
  • class edu.mssm.crover.ims.permissions.AccessRightsManager
  • class edu.mssm.crover.webapps.dimlib.util.AddRbdgXML
  • class edu.mssm.crover.ims.users.Address
  • class edu.mssm.crover.tables.AddToTable
  • class edu.mssm.crover.ims.users.Affiliation
  • class edu.mssm.crover.tables.treatments.Aggregation
  • class edu.mssm.crover.tables.treatments.Aggregation.Aggregate
  • class edu.mssm.crover.representation.Alignment (implements edu.mssm.crover.representation.BiologicalAlignment, java.io.Serializable)
  • class edu.mssm.crover.util.AlignmentReader
  • class edu.mssm.crover.bturns.AlignSeqPos
  • class edu.mssm.crover.webapps.dimlib.datamodel.AlnID
  • class edu.mssm.crover.webapps.dimlib.util.AlnValidator
  • class edu.mssm.crover.representation.Annotation (implements edu.mssm.crover.representation.BiologicalAnnotation, java.io.Serializable)
    • class edu.mssm.crover.representation.Color_Annotation
      • class edu.mssm.crover.representation.Extended_ColorAnnotation
    • class edu.mssm.crover.representation.Disulfide_Annotation
    • class edu.mssm.crover.representation.Domain_Annotation (implements java.io.Serializable)
      • class edu.mssm.crover.representation.TM_Annotation (implements java.io.Serializable)
    • class edu.mssm.crover.domain2d.Domain2D_Annotation (implements java.io.Serializable)
    • class edu.mssm.crover.representation.Mutation_Annotation
    • class edu.mssm.crover.representation.ResidueAnnotation
    • class edu.mssm.crover.representation.SecondaryStructure_Annotation
      • class edu.mssm.crover.representation.ExtendedSS_Annotation
    • class edu.mssm.crover.representation.SequenceOrigin_Annotation
    • class edu.mssm.crover.representation.Spacer_Annotation
    • class edu.mssm.crover.representation.TmDomain_Annotation
    • class edu.mssm.crover.representation.URL_Annotation
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Annotations (implements java.io.Serializable)
  • class edu.mssm.crover.representation.Annotations (implements edu.mssm.crover.representation.BiologicalAnnotations, java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.datamodel.ArcadiaAlignedSequence (implements edu.mssm.crover.representation.BiologicalSequence)
  • class edu.mssm.crover.webapps.dimlib.datamodel.ArcadiaAlignment
  • class edu.mssm.crover.tables.ArrayTable (implements edu.mssm.crover.tables.Table)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.booleanComparator (implements edu.mssm.crover.tables.ValueComparator)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.booleanCopier (implements edu.mssm.crover.tables.ValueCopier)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.booleanStringAppender (implements edu.mssm.crover.tables.StringAppender)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.booleanStringConverter (implements edu.mssm.crover.tables.StringConverter)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.charComparator (implements edu.mssm.crover.tables.ValueComparator)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.charCopier (implements edu.mssm.crover.tables.ValueCopier)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.charStringAppender (implements edu.mssm.crover.tables.StringAppender)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.charStringConverter (implements edu.mssm.crover.tables.StringConverter)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.doubleComparator (implements edu.mssm.crover.tables.ValueComparator)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.doubleCopier (implements edu.mssm.crover.tables.ValueCopier)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.doubleStringAppender (implements edu.mssm.crover.tables.StringAppender)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.doubleStringConverter (implements edu.mssm.crover.tables.StringConverter)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.floatComparator (implements edu.mssm.crover.tables.ValueComparator)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.floatCopier (implements edu.mssm.crover.tables.ValueCopier)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.floatStringAppender (implements edu.mssm.crover.tables.StringAppender)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.floatStringConverter (implements edu.mssm.crover.tables.StringConverter)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.intComparator (implements edu.mssm.crover.tables.ValueComparator)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.intCopier (implements edu.mssm.crover.tables.ValueCopier)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.intStringAppender (implements edu.mssm.crover.tables.StringAppender)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.intStringConverter (implements edu.mssm.crover.tables.StringConverter)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.objectComparator (implements edu.mssm.crover.tables.ValueComparator)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.objectCopier (implements edu.mssm.crover.tables.ValueCopier)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.ObjectStringConverter (implements edu.mssm.crover.tables.StringConverter)
  • class edu.mssm.crover.tables.ArrayTable.ColumnDescription.StringStringAppender (implements edu.mssm.crover.tables.StringAppender)
  • class edu.mssm.crover.tables.ArrayTable.RowIterator (implements java.lang.Cloneable, edu.mssm.crover.tables.Table.RowIterator)
  • class junit.framework.Assert
    • class junit.framework.TestCase (implements junit.framework.Test)
      • class edu.mssm.crover.ims.permissions.test.AccessRightsManagerTest
      • class edu.mssm.crover.webapps.dimlib.datamodel.test.MutantProteinTest
      • class edu.mssm.crover.representation.SequenceTest
      • class edu.mssm.crover.tables.readers.test.TestTabTokenizer
      • class edu.mssm.crover.ims.tasks.engines.TestTaskEngines
  • class edu.mssm.crover.domain2d.BasicResidueGlyphRenderingAttributes (implements edu.mssm.crover.domain2d.ResidueGlyphRenderingAttributes)
  • class edu.mssm.crover.domain2d.BezierPath (implements java.lang.Cloneable)
  • class edu.mssm.crover.tools.blast.BlastCommand
  • class edu.mssm.crover.tools.blast.BlastContext
  • class edu.mssm.crover.tools.blast.BlastGeneProduct
  • class edu.mssm.crover.tools.tissue.xml.BlastHits (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v2.BlastOutput (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v1.BlastOutput (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v3.BlastOutput (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v1.BlastOutput_Hits (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v2.BlastOutput_IterationsType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v2.BlastOutput_Iterations (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v3.BlastOutput_IterationsType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v3.BlastOutput_Iterations (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v1.BlastOutput_Param (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v2.BlastOutput_ParamType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v2.BlastOutput_Param (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v3.BlastOutput_ParamType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v3.BlastOutput_Param (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v1.BlastOutput_Stat (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.BlastResult
  • class edu.mssm.crover.domain2d.BrushingModel (implements edu.mssm.crover.domain2d.BrushingModelInterface)
  • class edu.mssm.crover.structs.ca_position
  • class edu.mssm.crover.util.cd2ps
  • class edu.mssm.crover.tools.tissue.checkLibrary
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Chimera (implements java.io.Serializable)
  • class edu.mssm.crover.util.ChunkIterator
  • class edu.mssm.crover.util.cleanAlignment
  • class edu.mssm.crover.cli.CLI
  • class edu.mssm.crover.ims.tasks.tools.client
  • class edu.mssm.crover.util.CodonTable
  • class edu.mssm.crover.domain2d.ColorAnnotationsColorScheme (implements edu.mssm.crover.domain2d.ResidueColorScheme, java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.Colors (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.ColorScheme (implements java.io.Serializable)
  • class edu.mssm.crover.util.CommandLineOptions
  • class edu.mssm.crover.util.CompareSeqSets
  • class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • class java.awt.Canvas (implements javax.accessibility.Accessible)
      • class edu.mssm.crover.util.NotAVisualBean (implements java.beans.Visibility)
        • class edu.mssm.crover.util.FetchURL (implements java.beans.PropertyChangeListener, java.io.Serializable)
        • class edu.mssm.crover.util.MutationsToURLs (implements java.beans.PropertyChangeListener, java.io.Serializable)
    • class java.awt.Container
      • class javax.swing.JComponent (implements java.io.Serializable)
        • class javax.swing.JLayeredPane (implements javax.accessibility.Accessible)
          • class javax.swing.JDesktopPane (implements javax.accessibility.Accessible)
            • class edu.mssm.crover.beans.LooseTabbedPane.DesktopElement
        • class javax.swing.JPanel (implements javax.accessibility.Accessible)
          • class edu.mssm.crover.ssedit.AlignmentLineRepresentation
          • class edu.mssm.crover.domain2d.JPanelImage
          • class edu.mssm.crover.beans.LooseTabbedPane (implements javax.swing.event.ChangeListener)
          • class edu.mssm.crover.beans.LooseTabbedPane.FlyingElement (implements java.awt.event.ActionListener)
          • class edu.mssm.crover.domain2d.PrintablePanel (implements edu.mssm.crover.domain2d.CoolPrint)
            • class edu.mssm.crover.domain2d.DrawingSurface (implements edu.mssm.crover.domain2d.CoolPrintRescale, java.util.Observer, java.awt.print.Printable)
            • class edu.mssm.crover.domain2d.ResidueGlyph (implements edu.mssm.crover.domain2d.Drawing, java.util.Observer)
              • class edu.mssm.crover.domain2d.EllipsisGlyph
            • class edu.mssm.crover.domain2d.ResidueNumberingDrawings (implements edu.mssm.crover.domain2d.Drawing)
            • class edu.mssm.crover.domain2d.TwoEndsDomain (implements edu.mssm.crover.domain2d.Domain2D, java.util.Observer)
              • class edu.mssm.crover.domain2d.TwoEndsDraggableDomain
                • class edu.mssm.crover.domain2d.BetaStrandDomain (implements edu.mssm.crover.domain2d.Domain2D, java.util.Observer)
                • class edu.mssm.crover.domain2d.FreeLoop (implements edu.mssm.crover.domain2d.Domain2D, java.util.Observer)
                  • class edu.mssm.crover.domain2d.ExtremityDomain (implements edu.mssm.crover.domain2d.Domain2D)
                    • class edu.mssm.crover.domain2d.CtermDomain
                • class edu.mssm.crover.domain2d.HelicalDomain
                • class edu.mssm.crover.domain2d.InvalidDomain (implements edu.mssm.crover.domain2d.Domain2D, java.util.Observer)
                • class edu.mssm.crover.domain2d.ProteinSegmentDomain (implements edu.mssm.crover.domain2d.Domain2D, java.util.Observer)
          • class edu.mssm.crover.ssedit.SecondaryStructureEditor (implements java.lang.Cloneable, java.beans.PropertyChangeListener, java.io.Serializable)
          • class edu.mssm.crover.domain2d.TwoResidueLineDrawing (implements edu.mssm.crover.domain2d.Drawing)
            • class edu.mssm.crover.domain2d.DisulfidBridgeDrawing
      • class java.awt.Window (implements javax.accessibility.Accessible)
        • class java.awt.Dialog
          • class javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • class edu.mssm.crover.joe.JAboutDialog
        • class java.awt.Frame (implements java.awt.MenuContainer)
          • class javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • class edu.mssm.crover.joe.RbDe
            • class edu.mssm.crover.ssedit.SecondaryStructureEditorTest
    • class edu.mssm.crover.beans.LooseTabbedPane.AttachedFrame
  • class edu.mssm.crover.tables.treatments.CompositionTableTreatmentParameter
  • class edu.mssm.crover.scentral.ConnectionPool
  • class edu.mssm.crover.db.relational.ConnectionPool
  • class edu.mssm.crover.domain2d.rbdg.xml.ControlPoints (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.layout.xml.ControlPoints (implements java.io.Serializable)
  • class edu.mssm.crover.webservices.rbde.convertFrom1_0
  • class edu.mssm.crover.domain2d.rbdg.xml.Cpoint (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.layout.xml.Cpoint (implements java.io.Serializable)
  • class edu.mssm.crover.memtest.CroverSeqLeakTest
  • class edu.mssm.crover.tools.tissue.CuratedTissue
  • class edu.mssm.crover.webservices.rbde.CustomizedDiagramImpl1_0 (implements edu.mssm.crover.webservices.rbde.CustomizedDiagram, java.io.Serializable)
    • class edu.mssm.crover.webservices.rbde.CustomizedDiagramImpl1_1
  • class edu.mssm.crover.webservices.rbde.CustomizedDiagramImpl3_0 (implements edu.mssm.crover.webservices.rbde.CustomizedDiagram, java.io.Serializable, edu.mssm.crover.scentral.UpgradableObject)
  • class edu.mssm.crover.domain2d.rbdg.CustomizedDiagramImpl4_0
  • class edu.mssm.crover.webservices.rbde.CustomizedDiagramImpl5_0 (implements edu.mssm.crover.webservices.rbde.CustomizedDiagram, java.io.Serializable, edu.mssm.crover.scentral.UpgradableObject)
  • class edu.mssm.crover.tools.cutal
  • class edu.mssm.crover.odmg.objectstore.Database (implements org.odmg.Database)
  • class edu.mssm.crover.ims.submissions.DataPacket
  • class edu.mssm.crover.util.DayhoffMatrix (implements edu.mssm.crover.util.ResidueExchangeMatrix)
  • class edu.mssm.crover.db.objectstore.util.DBConnection
  • class edu.mssm.crover.db.objectstore.DBConnectionPool
  • class edu.mssm.crover.webapps.ims.constants.DBConstants
  • class edu.mssm.crover.tools.tissue.DbestParser
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Dblinks (implements java.io.Serializable)
  • class edu.mssm.crover.db.objectstore.util.DBUtil
  • class edu.mssm.crover.odmg.DBUtil
  • class edu.mssm.crover.domain2d.rbdg.xml.Define (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Deletion (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.Diagram
  • class edu.mssm.crover.domain2d.rbdg.xml.Diagram (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.DiagramLayout (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.layout.xml.DiagramLayout (implements java.io.Serializable)
  • class edu.mssm.crover.webservices.rbde.DiagramService (implements edu.mssm.crover.scentral.WebService)
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.DimlibSubmission (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.Direction (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.layout.xml.Direction (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.DisulfidBridgeTranslator (implements edu.mssm.crover.domain2d.AnnotationParser)
  • class edu.mssm.crover.domain2d.rbdg.xml.DisulfideBridge (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.Domain2D_ABuilder
  • class edu.mssm.crover.domain2d.DraggingModel (implements edu.mssm.crover.domain2d.DraggingModelInterface)
  • class edu.mssm.crover.mutations.drivers.DriverInformation
  • class edu.mssm.crover.odmg.fastobjects.util.DSet (implements org.odmg.DSet)
  • class edu.mssm.crover.domain2d.DSLayoutManager (implements java.awt.LayoutManager, java.io.Serializable)
  • class edu.mssm.crover.tables.readers.DSSPTableReader
  • class edu.mssm.crover.bturns.DSSPtoTurns
  • class edu.mssm.crover.domain2d.DummySolver (implements edu.mssm.crover.domain2d.Solver)
  • class edu.mssm.crover.tools.tissue.DumpTissueInfo
  • class edu.mssm.crover.domain2d.rbdg.Elipses
  • class edu.mssm.crover.domain2d.rbdg.xml.Elipses (implements java.io.Serializable)
  • class edu.mssm.crover.webservices.rbde.Elipses
  • class edu.mssm.crover.webapps.ims.util.ErrorOut
  • class java.util.EventObject (implements java.io.Serializable)
    • class edu.mssm.crover.beans.TabFocusEvent
  • class edu.mssm.crover.ims.permissions.EventType
  • class edu.mssm.crover.domain2d.rbdg.xml.Exclude (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.util.ExportAln
  • class edu.mssm.crover.webapps.dimlib.util.ExportXML
  • class edu.mssm.crover.webapps.dimlib.datamodel.ExternalReferencesImpl (implements edu.mssm.crover.webapps.dimlib.datamodel.ExternalReferences)
  • class edu.mssm.crover.util.extract
  • class edu.mssm.crover.tools.blast.ExtractAC
  • class edu.mssm.crover.tools.blast.ExtractAcIdentity
  • class edu.mssm.crover.tools.blast.ExtractDefLine
  • class edu.mssm.crover.bturns.ExtractTurns
  • class edu.mssm.crover.ims.tasks.engines.FailTaskEngine (implements edu.mssm.crover.ims.tasks.TaskEngine)
  • class edu.mssm.crover.util.FastaFormat
  • class edu.mssm.crover.imports.FastaReader (implements edu.mssm.crover.imports.SequenceReader)
    • class edu.mssm.crover.imports.PIRReader (implements edu.mssm.crover.imports.SequenceReader)
  • class edu.mssm.crover.imports.FastaReaderType (implements edu.mssm.crover.imports.ReaderType)
  • class edu.mssm.crover.ims.tasks.engines.FileContentTaskData (implements java.io.Serializable, edu.mssm.crover.ims.tasks.TaskData)
  • class edu.mssm.crover.ims.tasks.engines.FileTaskData (implements java.io.Serializable, edu.mssm.crover.ims.tasks.TaskData)
  • class edu.mssm.crover.ims.tasks.engines.FillTIWebTableTaskData (implements java.io.Serializable, edu.mssm.crover.ims.tasks.TaskData)
  • class edu.mssm.crover.ims.tasks.engines.FillTIWebTableTaskEngine (implements edu.mssm.crover.ims.tasks.TaskEngine)
  • class edu.mssm.crover.joe.tools.firsttool (implements edu.mssm.crover.joe.JoeTool)
  • class edu.mssm.crover.domain2d.rbdg.xml.types.FormatType (implements java.io.Serializable)
  • class edu.mssm.crover.webservices.rbde.FormDisplay
    • class edu.mssm.crover.webservices.rbde.DiagramAttributesForm
    • class edu.mssm.crover.webservices.rbde.LayoutSSFormDisplay
    • class edu.mssm.crover.webservices.rbde.ResidueAttributesForm
    • class edu.mssm.crover.webservices.rbde.SSFormDisplay
    • class edu.mssm.crover.webservices.rbde.TMFormDisplay
    • class edu.mssm.crover.webservices.rbde.UserColorInputForm
  • class edu.mssm.crover.imports.FortranOutputParser
  • class edu.mssm.crover.util.FragmentIdentityScoreEngine (implements edu.mssm.crover.util.ScoreEngine)
  • class edu.mssm.crover.mutations.drivers.GenericPosition
  • class javax.servlet.GenericServlet (implements java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig)
    • class javax.servlet.http.HttpServlet (implements java.io.Serializable)
      • class edu.mssm.crover.webservices.rbde.AnnotationsEditor
        • class edu.mssm.crover.webservices.rbde.CopySStoTM
        • class edu.mssm.crover.webservices.rbde.CopyTMtoSS
        • class edu.mssm.crover.webservices.rbde.DiagramAttributesEditor
        • class edu.mssm.crover.webservices.rbde.LayoutSSEditor
        • class edu.mssm.crover.webservices.rbde.ResidueAttributesEditor
        • class edu.mssm.crover.webservices.rbde.SSEditor
        • class edu.mssm.crover.webservices.rbde.TMEditor
        • class edu.mssm.crover.webservices.rbde.UserColorInputEditor
      • class edu.mssm.crover.webservices.rbde.AttributesInputPage
      • class edu.mssm.crover.webservices.rbde.DiagramLibrary
      • class edu.mssm.crover.webservices.rbde.DiagramMapProcessing
      • class edu.mssm.crover.webservices.rbde.DownloadCustomizedDiagram
      • class edu.mssm.crover.webservices.rbde.FastDiagramMode
      • class edu.mssm.crover.scentral.ForgottenPassword
      • class edu.mssm.crover.webservices.rbde.InvalidURLError
      • class edu.mssm.crover.webservices.rbde.LayoutPicker
      • class edu.mssm.crover.webapps.util.LegalDisclaimer
      • class edu.mssm.crover.webservices.rbde.LibraryObjectFormProcessor
        • class edu.mssm.crover.webservices.rbde.GetDiagram
        • class edu.mssm.crover.webservices.rbde.ListDiagrams
        • class edu.mssm.crover.webservices.rbde.SaveDiagram
      • class edu.mssm.crover.webservices.rbde.MissingInformation
      • class edu.mssm.crover.webservices.rbde.Mutations
      • class edu.mssm.crover.webservices.rbde.NewLayoutInputEditor
      • class edu.mssm.crover.webservices.rbde.PrintRbDgFile
      • class edu.mssm.crover.webservices.rbde.PrintSVG
      • class edu.mssm.crover.scentral.RegistrationDesk
      • class edu.mssm.crover.scentral.ResourceFile
      • class edu.mssm.crover.webservices.rbde.SecondaryStructureEdit
      • class edu.mssm.crover.webservices.rbde.SequenceDiagramGif (implements javax.servlet.SingleThreadModel)
      • class edu.mssm.crover.webservices.rbde.SequenceDiagramSVG (implements javax.servlet.SingleThreadModel)
      • class edu.mssm.crover.webservices.rbde.SequenceDisplay
      • class edu.mssm.crover.webservices.rbde.SequenceInputEditor
      • class cuttingedge.lw.ServletSessionManager
        • class edu.mssm.crover.webapps.dimlib.lw.DiMLibQueryServletSessionManager
        • class edu.mssm.crover.webapps.dimlib.lw.DiMLibServletSessionManager
        • class edu.mssm.crover.webapps.dimlib.lw.DiMLibViewerServletSessionManager
        • class edu.mssm.crover.webapps.ims.lwtest.HelloServletSessionManager
        • class edu.mssm.crover.webapps.ims.lw.IMSServletSessionManager
        • class edu.mssm.crover.webapps.ims.lwtest.ListTestServletSessionManager
        • class edu.mssm.crover.webapps.ims.lwtest.SwitchTestServletSessionManager
        • class edu.mssm.crover.webapps.ims.lwtest.TestReuseServletSessionManager
        • class edu.mssm.crover.webapps.tissueinfo.TissueInfoServletSessionManager
        • class edu.mssm.crover.webapps.tmprop.lw.TMPropServletSessionManager
      • class edu.mssm.crover.webservices.rbde.SessionError
      • class edu.mssm.crover.scentral.SessionLogin
      • class edu.mssm.crover.scentral.SessionLogout
      • class edu.mssm.crover.webservices.rbde.ShowDiagram
      • class edu.mssm.crover.webservices.rbde.SpacerAdjustment
      • class edu.mssm.crover.webservices.rbde.Start
      • class edu.mssm.crover.webservices.rbde.StoreDiagram (implements javax.servlet.SingleThreadModel)
      • class edu.mssm.crover.webservices.rbde.StoreNewLayout
      • class edu.mssm.crover.webservices.rbde.SVGDiagram (implements javax.servlet.SingleThreadModel)
      • class edu.mssm.crover.scentral.TestOracleConnection
      • class edu.mssm.crover.scentral.UninitializedSessionError
      • class edu.mssm.crover.webservices.rbde.UninitializedSessionError
      • class edu.mssm.crover.webservices.rbde.URLTestPage
      • class edu.mssm.crover.webservices.rbde.URLTestProcessing
      • class edu.mssm.crover.webservices.rbde.ViewLayout
  • class edu.mssm.crover.util.GenScan (implements edu.mssm.crover.util.GeneProductPredictor)
  • class edu.mssm.crover.tools.getAAComposition
  • class edu.mssm.crover.util.GetCeleraSeq
  • class edu.mssm.crover.tools.tissue.getCuratedTissue
  • class edu.mssm.crover.tools.tissue.getNulls
  • class edu.mssm.crover.webapps.dimlib.datamodel.GifMap
  • class edu.mssm.crover.domain2d.GlyphLinkImpl (implements edu.mssm.crover.domain2d.GlyphLink)
  • class edu.mssm.crover.domain2d.GPCRDB_ColorScheme (implements edu.mssm.crover.domain2d.ResidueColorScheme, java.io.Serializable)
  • class edu.mssm.crover.tools.tm.gpcrMotif
  • class edu.mssm.crover.domain2d.HelixLayout (implements java.awt.LayoutManager, java.io.Serializable)
  • class edu.mssm.crover.tools.tissue.Hierarchy
  • class edu.mssm.crover.tools.tissue.HierarchyKeywords
  • class edu.mssm.crover.tools.blast.parsers.xml.v1.Hit (implements java.io.Serializable)
  • class edu.mssm.crover.tools.tissue.xml.Hit (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v1.Hit_Hsps (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v2.Hit_HspsType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v2.Hit_Hsps (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v3.Hit_HspsType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v3.Hit_Hsps (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.HitSummary
  • class edu.mssm.crover.tools.blast.parsers.xml.v2.HitType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v2.Hit (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v3.HitType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v3.Hit (implements java.io.Serializable)
  • class edu.mssm.crover.tools.tm.HmmTop (implements edu.mssm.crover.util.TmPredictor)
  • class edu.mssm.crover.tools.tm.HmmTopLocal (implements edu.mssm.crover.util.TmPredictor)
  • class edu.mssm.crover.tools.blast.parsers.xml.v1.Hsp (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v2.HspType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v2.Hsp (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v3.HspType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v3.Hsp (implements java.io.Serializable)
  • class edu.mssm.crover.util.msaviz.HTMLAlignmentFormatter (implements edu.mssm.crover.util.msaviz.AlignmentFormatter)
  • class edu.mssm.crover.webapps.dimlib.util.HTMLFormatter
  • class edu.mssm.crover.tools.mapstrength.HumanLocus (implements edu.mssm.crover.tools.mapstrength.Locus)
  • class edu.mssm.crover.webapps.tmprop.datamodel.HydrophobicityOptions
  • class edu.mssm.crover.identification.Identification
  • class edu.mssm.crover.domain2d.rbdg.xml.Image (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.ImageMap (implements java.io.Serializable)
  • class edu.mssm.crover.odmg.objectstore.Implementation (implements org.odmg.Implementation)
  • class com.poet.odmg.Implementation (implements org.odmg.Implementation)
    • class edu.mssm.crover.odmg.fastobjects.Implementation (implements org.odmg.Implementation)
  • class edu.mssm.crover.webapps.dimlib.util.ImportWTP
  • class edu.mssm.crover.webapps.dimlib.util.ImportXML
  • class edu.mssm.crover.ims.IMSConstants
  • class edu.mssm.crover.webapps.ims.util.IMSError
  • class edu.mssm.crover.ims.IMSObject
    • class edu.mssm.crover.ims.submissions.BatchSubmissionDriver
    • class edu.mssm.crover.ims.DBConnection
    • class cuttingedge.lw.form.GenericExpression
      • class edu.mssm.crover.webapps.ims.input.LoginExpression
      • class edu.mssm.crover.webapps.ims.lwtest.SwitchExpression
    • class edu.mssm.crover.db.object.schema.ims.GenericSchemaManager
      • class edu.mssm.crover.db.object.schema.ims.IMSSchemaManager
      • class edu.mssm.crover.db.object.schema.ims.IMSUserSchemaManager
      • class edu.mssm.crover.db.object.schema.ims.SubmissionSchemaManager
    • class edu.mssm.crover.ims.IMS (implements edu.mssm.crover.ims.TransactionManager)
    • class edu.mssm.crover.ims.IMSManager
      • class edu.mssm.crover.ims.permissions.AccessGroupManager
      • class edu.mssm.crover.ims.users.IMSUserManager
      • class edu.mssm.crover.ims.submissions.SubmissionManager
    • class edu.mssm.crover.ims.users.UserDriver
  • class edu.mssm.crover.ims.users.IMSUser
  • class edu.mssm.crover.webapps.ims.util.IMSUtil
  • class edu.mssm.crover.domain2d.rbdg.xml.Include (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Insertion (implements java.io.Serializable)
  • class edu.mssm.crover.util.Inspect
  • class edu.mssm.crover.scentral.InstanceIterator
  • class edu.mssm.crover.webservices.rbde.InstanceIterator
  • class edu.mssm.crover.tools.blast.parsers.xml.v2.Iteration_HitsType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v2.Iteration_Hits (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v3.Iteration_HitsType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v3.Iteration_Hits (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v2.Iteration_StatType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v2.Iteration_Stat (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v3.Iteration_StatType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v3.Iteration_Stat (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v2.IterationType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v2.Iteration (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v3.IterationType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v3.Iteration (implements java.io.Serializable)
  • class edu.mssm.crover.tables.JDBCTable
  • class edu.mssm.crover.webapps.dimlib.JDOFactory
  • class edu.mssm.crover.joe.JoeImpl (implements edu.mssm.crover.joe.Joe)
  • class edu.mssm.crover.tables.KeepAllFilter (implements edu.mssm.crover.tables.Filter)
  • class edu.mssm.crover.domain2d.LayoutController
  • class edu.mssm.crover.domain2d.LayoutParser
  • class edu.mssm.crover.memtest.LeakTest
  • class edu.mssm.crover.memtest.LeakTester
  • class edu.mssm.crover.webservices.rbde.LibraryObjectForm
  • class edu.mssm.crover.scentral.LibraryObjectInfo (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Link (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.Links (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.datamodel.LiteratureReferenceImpl (implements java.lang.Comparable, edu.mssm.crover.webapps.dimlib.datamodel.LiteratureReference)
  • class edu.mssm.crover.webapps.dimlib.datamodel.LiteratureReferencesImpl (implements edu.mssm.crover.webapps.dimlib.datamodel.LiteratureReferences)
  • class edu.mssm.crover.webapps.dimlib.util.LitRefSorter
  • class edu.mssm.crover.tools.regel.Locus
  • class edu.mssm.crover.tables.readers.LocusLinkFilter (implements edu.mssm.crover.tables.Filter)
  • class edu.mssm.crover.tables.readers.LocusLinkTableReader
  • class edu.mssm.crover.joe.LogImpl (implements edu.mssm.crover.joe.Log)
  • class edu.mssm.crover.domain2d.LoopTemplateSelectorImpl (implements edu.mssm.crover.domain2d.LoopTemplateSelector)
  • class edu.mssm.crover.webapps.dimlib.util.MailAlert
  • class edu.mssm.crover.ims.tasks.engines.MakeTissueListTaskData (implements java.io.Serializable, edu.mssm.crover.ims.tasks.TaskData)
  • class edu.mssm.crover.ims.tasks.engines.MakeTissueListTaskEngine (implements edu.mssm.crover.ims.tasks.TaskEngine)
  • class edu.mssm.crover.tools.regel.mapcdna
  • class edu.mssm.crover.tools.regel.Mapping
  • class edu.mssm.crover.tools.mapstrength.mapstrength
  • class edu.mssm.crover.tools.mapstrength.MapStrengthStats
  • class edu.mssm.crover.ims.tasks.engines.MaskSequenceTaskData (implements java.io.Serializable, edu.mssm.crover.ims.tasks.TaskData)
  • class edu.mssm.crover.ims.tasks.engines.MaskSequenceTaskEngine (implements edu.mssm.crover.ims.tasks.TaskEngine)
  • class edu.mssm.crover.tools.regel.Match
  • class edu.mssm.crover.bturns.Matrix
  • class edu.mssm.crover.tools.blast.MegablastHSIterator (implements edu.mssm.crover.tools.blast.HitSummaryIterator)
  • class edu.mssm.crover.ims.tasks.engines.MegablastTaskData (implements java.io.Serializable, edu.mssm.crover.ims.tasks.TaskData)
  • class edu.mssm.crover.ims.tasks.engines.MegablastTaskEngine (implements edu.mssm.crover.ims.tasks.TaskEngine)
  • class edu.mssm.crover.domain2d.MemLeakTestDiagram
  • class edu.mssm.crover.scentral.MenuBar
    • class edu.mssm.crover.webservices.rbde.DiagramMenuBar
  • class edu.mssm.crover.webapps.ims.util.Messages
  • class edu.mssm.crover.tables.readers.MinesetTableReader
  • class edu.mssm.crover.tables.writers.MinesetTableWriter
  • class edu.mssm.crover.domain2d.MonotonousColorScheme (implements edu.mssm.crover.domain2d.ResidueColorScheme, java.io.Serializable)
  • class edu.mssm.crover.util.MotifFinder
  • class java.awt.event.MouseAdapter (implements java.awt.event.MouseListener)
    • class edu.mssm.crover.domain2d.BrushingMouseListener (implements java.awt.event.MouseMotionListener)
  • class edu.mssm.crover.webapps.dimlib.util.MPSorter
  • class edu.mssm.crover.util.MultiplePartFileIterator
  • class edu.mssm.crover.ims.tasks.tools.MultiTasks
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Mutant (implements java.io.Serializable)
  • class edu.mssm.crover.mutations.drivers.Mutant
  • class edu.mssm.crover.webapps.dimlib.datamodel.MutantAdditionalInfo
  • class edu.mssm.crover.webapps.dimlib.datamodel.MutantID
  • class edu.mssm.crover.webapps.dimlib.datamodel.MutantProtein (implements java.lang.Comparable)
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Mutants (implements java.io.Serializable)
  • class edu.mssm.crover.webservices.rbde.MutantSubServiceState
  • class edu.mssm.crover.mutations.drivers.Mutation (implements java.lang.Comparable)
  • class edu.mssm.crover.mutations.drivers.MutationDriverCache (implements edu.mssm.crover.mutations.drivers.MutationDriver)
    • class edu.mssm.crover.mutations.drivers.dimlib.DiMLibDriver
    • class edu.mssm.crover.mutations.drivers.tinygrap.TinyGrapDriver
  • class edu.mssm.crover.mutations.drivers.MutationDriverCache.CachedMutants
  • class edu.mssm.crover.mutations.drivers.MutationDriverFactoryImpl (implements edu.mssm.crover.mutations.drivers.MutationDriverFactory)
  • class edu.mssm.crover.webservices.rbde.MutationFilters
  • class edu.mssm.crover.webapps.dimlib.datamodel.MutationManager
  • class edu.mssm.crover.webapps.dimlib.util.MutationParser
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Mutations (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.MutationsItem (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.util.MutationSorter
  • class edu.mssm.crover.util.MutationToUrlConverter
  • class edu.mssm.crover.mutations.drivers.MutationType
  • class edu.mssm.crover.webapps.dimlib.util.MutationValidator
  • class edu.mssm.crover.domain2d.NBezierPath (implements java.lang.Cloneable)
  • class edu.mssm.crover.util.NCBISequences
  • class edu.mssm.crover.ims.tasks.engines.NilEngine (implements edu.mssm.crover.ims.tasks.TaskEngine)
    • class edu.mssm.crover.ims.tasks.engines.RobustParallelTaskEngine (implements edu.mssm.crover.ims.tasks.TaskEngine)
  • class org.omg.CORBA.portable.ObjectImpl (implements org.omg.CORBA.Object)
    • class org.omg.CORBA.DynamicImplementation
      • class edu.mssm.crover.corba.servers.sequences._SequenceRepositoryImplBase (implements edu.mssm.crover.corba.servers.sequences.SequenceRepository)
    • class edu.mssm.crover.corba.servers.sequences.StubForSequenceRepository (implements edu.mssm.crover.corba.servers.sequences.SequenceRepository)
  • class java.util.Observable
    • class edu.mssm.crover.domain2d.DBSModel (implements edu.mssm.crover.domain2d.AbstractModel, edu.mssm.crover.domain2d.BrushingModelInterface, edu.mssm.crover.domain2d.DraggingModelInterface, edu.mssm.crover.domain2d.SelectedModelInterface)
      • class edu.mssm.crover.domain2d.BetaStrandModel
      • class edu.mssm.crover.domain2d.DefaultHelixModel (implements edu.mssm.crover.domain2d.HelixModel)
      • class edu.mssm.crover.domain2d.FreeLoopModel
        • class edu.mssm.crover.domain2d.ExtremityModel
      • class edu.mssm.crover.domain2d.ProteinSegmentModel
    • class edu.mssm.crover.domain2d.Domain2D_Annotation.LayoutInfo (implements java.io.Serializable)
    • class edu.mssm.crover.domain2d.Domain2D_Annotation.RenderingInfo (implements java.io.Serializable)
    • class edu.mssm.crover.domain2d.ReflexPoint (implements edu.mssm.crover.domain2d.ConstrainedPoint)
    • class edu.mssm.crover.domain2d.ResidueModel (implements edu.mssm.crover.domain2d.AbstractModel, edu.mssm.crover.domain2d.BrushingModelInterface, java.lang.Cloneable, edu.mssm.crover.domain2d.DraggingModelInterface, edu.mssm.crover.domain2d.SelectedModelInterface)
    • class edu.mssm.crover.domain2d.UIStates
  • class edu.mssm.crover.odmg.ODMG
  • class edu.mssm.crover.odmg.objectstore.ODMG
  • class edu.mssm.crover.domain2d.rbdg.xml.Options (implements java.io.Serializable)
  • class edu.mssm.crover.tables.OrderedTable (implements edu.mssm.crover.tables.Table)
  • class edu.mssm.crover.tables.OrderedTable.OrderedRowIterator (implements java.lang.Cloneable, edu.mssm.crover.tables.Table.RowIterator)
  • class edu.mssm.crover.representation.Origin (implements edu.mssm.crover.representation.BiologicalOrigin, java.io.Serializable)
    • class edu.mssm.crover.imports.PDBReaderOrigin (implements java.io.Serializable)
    • class edu.mssm.crover.imports.SwissProtReaderOrigin (implements java.io.Serializable)
  • class edu.mssm.crover.representation.OriginFactory
  • class com.odi.util.OSAbstractSet (implements com.odi.IPersistent, com.odi.IPersistentHooks, java.util.Set)
    • class com.odi.util.OSHashSet (implements java.lang.Cloneable, com.odi.util.FastContains, com.odi.IPersistent, java.io.Serializable, java.util.Set)
      • class edu.mssm.crover.odmg.objectstore.util.DSet (implements org.odmg.DSet)
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Other_Protein (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.Output (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.Page (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Paper (implements java.io.Serializable)
  • class edu.mssm.crover.ims.tasks.tools.ParallelTasks
  • class edu.mssm.crover.tools.blast.parsers.xml.v1.Parameters (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v2.ParametersType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v2.Parameters (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v3.ParametersType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v3.Parameters (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v2.Parser
  • class edu.mssm.crover.tools.blast.parsers.xml.v1.Parser
  • class edu.mssm.crover.tools.blast.parsers.xml.v3.Parser
  • class edu.mssm.crover.structs.PdbChainHomology
  • class edu.mssm.crover.structs.PdbDistances
  • class edu.mssm.crover.imports.PDBReader (implements edu.mssm.crover.imports.SequenceReader)
  • class edu.mssm.crover.imports.PDBReader.Session
  • class edu.mssm.crover.imports.PDBReaderType (implements edu.mssm.crover.imports.ReaderType)
  • class edu.mssm.crover.scentral.PersistenceScheme_JDBC_Impl (implements edu.mssm.crover.scentral.PersistenceScheme)
    • class edu.mssm.crover.webservices.rbde.DS_PersistenceScheme_JDBC_Impl (implements edu.mssm.crover.webservices.rbde.DS_PersistenceScheme)
  • class edu.mssm.crover.scentral.PersistenceScheme_nil_Impl (implements edu.mssm.crover.scentral.PersistenceScheme)
  • class edu.mssm.crover.scentral.PersistenceScheme_Serialization_Impl (implements edu.mssm.crover.scentral.PersistenceScheme)
  • class edu.mssm.crover.util.PhdHtmTM
  • class edu.mssm.crover.webapps.ims.input.prototype.PhosphoParams
  • class edu.mssm.crover.imports.PIRReaderType (implements edu.mssm.crover.imports.ReaderType)
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.PointMutation (implements java.io.Serializable)
  • class edu.mssm.crover.webservices.rbde.PredefinedColors
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Protein (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.Protein (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.datamodel.ProteinID
  • class edu.mssm.crover.domain2d.ProteinSegmentLinkImpl (implements edu.mssm.crover.domain2d.GlyphLink)
  • class edu.mssm.crover.tools.tissue.xml.QuerySequence (implements java.io.Serializable)
  • class edu.mssm.crover.tables.QueryTable
  • class edu.mssm.crover.representation.RandomAccessAlignment (implements java.io.Serializable)
  • class edu.mssm.crover.tables.treatments.RandomSample
  • class edu.mssm.crover.domain2d.rbdg.xml.RbdeDiagram (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.rbdg
  • class edu.mssm.crover.webapps.dimlib.util.RbdgXMLGenerator
  • class edu.mssm.crover.db.relational.RDB
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.References (implements java.io.Serializable)
  • class java.rmi.server.RemoteObject (implements java.rmi.Remote, java.io.Serializable)
    • class java.rmi.server.RemoteServer
      • class java.rmi.server.UnicastRemoteObject
        • class edu.mssm.crover.ims.tasks.rmi.TaskManagerRMIServerImpl (implements edu.mssm.crover.ims.tasks.rmi.TaskManagerRMIServer)
  • class edu.mssm.crover.util.RemoveHTMLTags (implements java.io.Serializable)
  • class edu.mssm.crover.tools.tissue.replaceRawTissue
  • class edu.mssm.crover.ims.tasks.tools.Reporter
  • class edu.mssm.crover.tools.tissue.ReportParser
  • class edu.mssm.crover.ims.tasks.tools.Rescheduler
  • class edu.mssm.crover.domain2d.rbdg.xml.Residue (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.ResidueBackground (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.ResidueColor (implements java.io.Serializable)
  • class edu.mssm.crover.bturns.ResidueComposition
  • class edu.mssm.crover.domain2d.ResidueGlyphFactoryImpl (implements edu.mssm.crover.domain2d.ResidueGlyphFactory)
  • class edu.mssm.crover.domain2d.rbdg.xml.ResidueShape (implements java.io.Serializable)
  • class edu.mssm.crover.scentral.RestrictedUserRecord
  • class edu.mssm.crover.domain2d.RExpression
    • class edu.mssm.crover.domain2d.RAdd
    • class edu.mssm.crover.domain2d.RConstAdaptor
    • class edu.mssm.crover.domain2d.RConstant
    • class edu.mssm.crover.domain2d.REqual
    • class edu.mssm.crover.domain2d.RGE
    • class edu.mssm.crover.domain2d.RSub
    • class edu.mssm.crover.domain2d.RVariable
  • class edu.mssm.crover.ims.tasks.rmi.RMITask (implements java.io.Serializable, edu.mssm.crover.ims.tasks.TaskControl)
  • class edu.mssm.crover.domain2d.Rotator
  • class edu.mssm.crover.util.ScanForTms
  • class edu.mssm.crover.ims.tasks.tools.Scheduler
  • class edu.mssm.crover.webapps.ims.input.prototype.SearchSelectParams
  • class edu.mssm.crover.domain2d.rbdg.xml.SecondaryStructure (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.Segment (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.SelectedModel (implements edu.mssm.crover.domain2d.SelectedModelInterface)
  • class edu.mssm.crover.domain2d.SelectionToVisualization (implements java.util.Observer)
  • class edu.mssm.crover.tools.blast.seqinfo
  • class edu.mssm.crover.representation.Sequence (implements edu.mssm.crover.representation.AnnotatedBioSequence, java.io.Serializable)
  • class edu.mssm.crover.util.SequenceChunkIterator
  • class edu.mssm.crover.corba.servers.sequences.SequenceID
  • class edu.mssm.crover.corba.servers.sequences.SequenceIDHelper
  • class edu.mssm.crover.corba.servers.sequences.SequenceIDHolder (implements org.omg.CORBA.portable.Streamable)
  • class edu.mssm.crover.imports.SequenceReaderFactoryImpl (implements edu.mssm.crover.imports.SequenceReaderFactory)
  • class edu.mssm.crover.corba.servers.sequences.SequenceRepositoryHelper
  • class edu.mssm.crover.corba.servers.sequences.SequenceRepositoryHolder (implements org.omg.CORBA.portable.Streamable)
  • class edu.mssm.crover.ims.tasks.engines.SequenceTaskData (implements java.io.Serializable, edu.mssm.crover.ims.tasks.TaskData)
  • class edu.mssm.crover.imports.SeqUtils
  • class edu.mssm.crover.scentral.ServiceManager (implements java.io.Serializable)
  • class edu.mssm.crover.scentral.ServletCentral (implements edu.mssm.crover.scentral.SimpleMailer)
  • class edu.mssm.crover.webapps.dimlib.util.Setup
  • class edu.mssm.crover.domain2d.SharedResidueModelFactory (implements edu.mssm.crover.domain2d.ResidueModelFactory)
  • class edu.mssm.crover.util.sid
  • class edu.mssm.crover.util.SimpleTM
  • class edu.mssm.crover.ims.tasks.engines.SleepTaskEngine (implements edu.mssm.crover.ims.tasks.TaskEngine)
  • class edu.mssm.crover.util.smask
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Snp (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.datamodel.SNP (implements java.lang.Comparable)
  • class edu.mssm.crover.webapps.dimlib.datamodel.SnpID
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Snps (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.util.SNPValidator
  • class edu.mssm.crover.tables.treatments.SortTableTreatment
  • class edu.mssm.crover.tables.treatments.SortTableTreatment.RowIteratorComparator (implements java.util.Comparator)
  • class edu.mssm.crover.util.SosuiResult
  • class edu.mssm.crover.domain2d.rbdg.xml.Spacer (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.layout.xml.Spacer (implements java.io.Serializable)
  • class edu.mssm.crover.util.splitfile
  • class edu.mssm.crover.ssedit.SSSequenceRange (implements edu.mssm.crover.ssedit.SequenceRange)
  • class edu.mssm.crover.scentral.StateNode
    • class edu.mssm.crover.webservices.rbde.AtEditorNode
    • class edu.mssm.crover.webservices.rbde.DiagramLibraryNode
    • class edu.mssm.crover.webservices.rbde.FastDiagramModeNode
    • class edu.mssm.crover.webservices.rbde.GetDiagramNode
    • class edu.mssm.crover.webservices.rbde.HomeNode
    • class edu.mssm.crover.webservices.rbde.ListDiagramsNode
    • class edu.mssm.crover.scentral.LogoutNode
    • class edu.mssm.crover.webservices.rbde.MutationNode
    • class edu.mssm.crover.scentral.RegistrationDeskNode
    • class edu.mssm.crover.webservices.rbde.RegistrationDeskNode
    • class edu.mssm.crover.webservices.rbde.SaveDiagramNode
    • class edu.mssm.crover.webservices.rbde.SequenceNode
    • class edu.mssm.crover.webservices.rbde.SSEditorNode
    • class edu.mssm.crover.webservices.rbde.StartNode
    • class edu.mssm.crover.webservices.rbde.URLTestNode
  • class edu.mssm.crover.tools.blast.parsers.xml.v1.Statistics (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v2.StatisticsType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v2.Statistics (implements java.io.Serializable)
  • class edu.mssm.crover.tools.blast.parsers.xml.v3.StatisticsType (implements java.io.Serializable)
    • class edu.mssm.crover.tools.blast.parsers.xml.v3.Statistics (implements java.io.Serializable)
  • class edu.mssm.crover.util.strim
  • class edu.mssm.crover.ims.submissions.Submission
  • class edu.mssm.crover.ims.submissions.collections.SubmissionCatalog
  • class edu.mssm.crover.ims.submissions.SubmissionEvent
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Submitter (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.datamodel.SubmitterInfo (implements java.lang.Comparable)
  • class edu.mssm.crover.domain2d.rbdg.xml.Subunit (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.layout.xml.Subunit (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.SubunitRef (implements java.io.Serializable)
  • class edu.mssm.crover.tools.sumColumns
  • class edu.mssm.crover.ims.tasks.engines.SumSometimeTaskEngine (implements edu.mssm.crover.ims.tasks.TaskEngine)
  • class edu.mssm.crover.ims.tasks.engines.SumTaskData (implements java.io.Serializable, edu.mssm.crover.ims.tasks.TaskData)
  • class edu.mssm.crover.ims.tasks.engines.SumTaskEngine (implements edu.mssm.crover.ims.tasks.TaskEngine)
  • class edu.mssm.crover.ims.tasks.engines.SumTaskEngine.SumTaskEngine1 (implements edu.mssm.crover.ims.tasks.TaskEngine)
  • class edu.mssm.crover.util.msaviz.SVGAlignmentFormatter (implements edu.mssm.crover.util.msaviz.AlignmentFormatter)
  • class edu.mssm.crover.imports.SwissProtReader (implements edu.mssm.crover.imports.SequenceReader)
    • class edu.mssm.crover.imports.ExtendedSwissProtReader
  • class edu.mssm.crover.imports.SwissProtReaderType (implements edu.mssm.crover.imports.ReaderType)
  • class edu.mssm.crover.webservices.rbde.SwissProtSearchURL
  • class edu.mssm.crover.tables.TableActivityWatcher
  • class edu.mssm.crover.tables.treatments.TableTreatment (implements edu.mssm.crover.tables.treatments.Treatment)
    • class edu.mssm.crover.tables.treatments.CompositionTableTreatment
    • class edu.mssm.crover.bturns.ToTurnsTableTreatment
    • class edu.mssm.crover.bturns.TurnDisplacementsTableTreatment
  • class edu.mssm.crover.tables.readers.TabTokenizer
  • class edu.mssm.crover.ims.tasks.Task (implements edu.mssm.crover.ims.tasks.TaskControl, edu.mssm.crover.ims.tasks.TaskListener)
    • class edu.mssm.crover.ims.tasks.groups.GroupOfTasks (implements edu.mssm.crover.ims.tasks.TaskListener)
      • class edu.mssm.crover.ims.tasks.groups.ParallelTask
      • class edu.mssm.crover.ims.tasks.groups.RobustParallelTask
      • class edu.mssm.crover.ims.tasks.groups.SequenceTask
  • class edu.mssm.crover.ims.tasks.TaskManager
  • class edu.mssm.crover.ims.tasks.results.TaskResult (implements java.io.Serializable)
    • class edu.mssm.crover.ims.tasks.results.FileResult (implements java.io.Serializable)
    • class edu.mssm.crover.ims.tasks.results.LongResult (implements java.io.Serializable)
    • class edu.mssm.crover.ims.tasks.results.NoResult (implements java.io.Serializable)
    • class edu.mssm.crover.ims.tasks.results.SequenceResult (implements java.io.Serializable)
    • class edu.mssm.crover.ims.tasks.results.SerializedFileResult (implements java.io.Serializable)
    • class edu.mssm.crover.ims.tasks.results.StringResult (implements java.io.Serializable)
  • class edu.mssm.crover.ims.tasks.TaskStatus
  • class edu.mssm.crover.ims.tasks.TaskWatch
  • class edu.mssm.crover.util.msaviz.TestFormatters
  • class edu.mssm.crover.util.msaviz.TextAlignmentFormatter (implements edu.mssm.crover.util.msaviz.AlignmentFormatter)
  • class java.lang.Thread (implements java.lang.Runnable)
    • class edu.mssm.crover.ims.users.test.IMSUserManagerTest (implements java.lang.Runnable)
    • class edu.mssm.crover.ims.test.RunnableTransactionDriver (implements java.lang.Runnable)
    • class edu.mssm.crover.ims.test.RunnableTxnTest (implements java.lang.Runnable)
  • class java.lang.ThreadLocal
    • class edu.mssm.crover.ims.ThreadLocalDBConnection
  • class java.lang.Throwable (implements java.io.Serializable)
    • class java.lang.Error
      • class edu.mssm.crover.domain2d.LayoutController.LayoutAlreadySelected
    • class java.lang.Exception
      • class edu.mssm.crover.scentral.BadPersistentID
      • class edu.mssm.crover.scentral.BadUserID
      • class edu.mssm.crover.tools.tissue.ColumnIdentifierLengthException
      • class edu.mssm.crover.tables.ColumnTypeException
      • class edu.mssm.crover.tools.CommandNotInstalled
      • class edu.mssm.crover.db.DatabaseErrorException
        • class edu.mssm.crover.tools.tissue.TissueInfoNotAvailableException
      • class edu.mssm.crover.tools.blast.DatabaseNotFound
      • class edu.mssm.crover.domain2d.Domain2D_ABuilder.UnsupportedSubunitType
      • class edu.mssm.crover.domain2d.Domain2D_Annotation.BadDomain2DRenderingClass
      • class edu.mssm.crover.domain2d.Domain2D_Annotation.BadLoopTemplateClass
      • class edu.mssm.crover.webapps.ims.util.IMSException
      • class edu.mssm.crover.tables.treatments.InadequateBindingException
        • class edu.mssm.crover.tables.treatments.InadequateDestinationException
        • class edu.mssm.crover.tables.treatments.InadequateSourceException
      • class edu.mssm.crover.ims.tasks.IncorrectStateException
      • class edu.mssm.crover.tables.InvalidColumnException
      • class edu.mssm.crover.imports.InvalidFieldLimits
      • class edu.mssm.crover.representation.InvalidLocationException
      • class edu.mssm.crover.util.InvalidMotifException
      • class edu.mssm.crover.webapps.dimlib.util.InvalidMutationException
      • class edu.mssm.crover.domain2d.InvalidRange
      • class edu.mssm.crover.webapps.dimlib.util.InvalidResidueException
      • class edu.mssm.crover.webapps.dimlib.util.InvalidSNPException
      • class edu.mssm.crover.domain2d.InvalidState
      • class edu.mssm.crover.webapps.dimlib.util.InvalidSubmissionException
      • class edu.mssm.crover.webapps.dimlib.util.InvalidTMException
      • class edu.mssm.crover.tools.mapstrength.LocusSyntaxErrorException
      • class edu.mssm.crover.bturns.Matrix.MatrixException
      • class edu.mssm.crover.scentral.MissingFormParameterException
      • class edu.mssm.crover.webservices.rbde.MissingFormParameterException
      • class edu.mssm.crover.representation.NoSuchResidue
      • class edu.mssm.crover.scentral.PasswordDoesNotMatch
      • class edu.mssm.crover.mutations.drivers.ProtocolError
      • class edu.mssm.crover.representation.RandomAccessAlignment.SequenceNotFoundInAlignment
      • class edu.mssm.crover.tools.RangeNotFoundException
      • class edu.mssm.crover.scentral.RegistrationFailure
      • class edu.mssm.crover.domain2d.RInvalidChange
      • class java.lang.RuntimeException
        • class edu.mssm.crover.ims.tasks.DatabaseNotAvailableException
        • class edu.mssm.crover.joe.InvalidArgumentException
        • class edu.mssm.crover.imports.SyntaxErrorException
        • class edu.mssm.crover.imports.UnsupportedFileFormatException
      • class edu.mssm.crover.representation.SecondaryStructure_Annotation.InconsistentLimitsException
      • class edu.mssm.crover.representation.SecondaryStructure_Annotation.InvalidTypeException
      • class edu.mssm.crover.ims.tasks.groups.SequenceTaskFailureException
      • class edu.mssm.crover.domain2d.SolverInternalError
      • class edu.mssm.crover.mutations.drivers.SourceNotAvailable
      • class edu.mssm.crover.ims.submissions.SubmissionOwnerNotFoundException
      • class edu.mssm.crover.tables.readers.SyntaxErrorException
      • class edu.mssm.crover.ims.tasks.TaskFailedException
      • class edu.mssm.crover.ims.tasks.TaskNotFoundException
      • class edu.mssm.crover.ims.tasks.TaskRunningException
      • class edu.mssm.crover.representation.TmDomain_Annotation.InconsistentLimitsException
      • class edu.mssm.crover.ims.tasks.TooManyRescheduleException
      • class edu.mssm.crover.ims.TransactionNotFoundException
      • class edu.mssm.crover.tables.treatments.TreatmentInterrupted
      • class edu.mssm.crover.tables.TypeMismatchException
      • class edu.mssm.crover.tables.writers.UnsupportedColumnTypeException
      • class edu.mssm.crover.tools.blast.parsers.UnsupportedFormat
      • class edu.mssm.crover.tables.readers.UnsupportedFormatException
      • class edu.mssm.crover.util.UnsupportedOrganism
      • class edu.mssm.crover.mutations.drivers.UnsupportedOrigin
      • class edu.mssm.crover.imports.UnsupportedResidueType
      • class org.omg.CORBA.UserException (implements org.omg.CORBA.portable.IDLEntity)
        • class edu.mssm.crover.corba.servers.sequences.UnknownSequence
      • class edu.mssm.crover.tools.WrapperFailed
      • class edu.mssm.crover.cli.WrongArgumentTypeException
      • class edu.mssm.crover.tools.blast.WrongFileFormatException
      • class edu.mssm.crover.tools.blast.parsers.XMLVersionNotSupportedException
  • class edu.mssm.crover.tools.tissue.tiambiguity
  • class edu.mssm.crover.util.tidyHD
  • class edu.mssm.crover.util.tidySeq
  • class edu.mssm.crover.tools.tissue.tiimport
  • class edu.mssm.crover.tools.tissue.timegablast
  • class edu.mssm.crover.ims.tasks.engines.TIMegablastTaskData (implements java.io.Serializable, edu.mssm.crover.ims.tasks.TaskData)
  • class edu.mssm.crover.ims.tasks.engines.TIMegablastTaskEngine (implements edu.mssm.crover.ims.tasks.TaskEngine)
  • class edu.mssm.crover.tools.tissue.tiquery
  • class edu.mssm.crover.ims.tasks.engines.TIQueryTaskData (implements java.io.Serializable, edu.mssm.crover.ims.tasks.TaskData)
  • class edu.mssm.crover.ims.tasks.engines.TIQueryTaskEngine (implements edu.mssm.crover.ims.tasks.TaskEngine)
  • class edu.mssm.crover.tools.tissue.tisearch
  • class edu.mssm.crover.tools.tissue.TissueCuration
  • class edu.mssm.crover.tools.tissue.TissueDetails
  • class edu.mssm.crover.tools.tissue.xml.TissueInfo (implements java.io.Serializable)
  • class edu.mssm.crover.tools.tissue.TissueInfo_CacheImpl (implements java.io.Serializable, edu.mssm.crover.tools.tissue.TissueInfo)
  • class edu.mssm.crover.tools.tissue.TissueInfo_JDBCImpl (implements edu.mssm.crover.tools.tissue.TissueInfo)
  • class edu.mssm.crover.tools.tissue.TissueInfo_MemoryImpl (implements edu.mssm.crover.tools.tissue.TissueInfo)
  • class edu.mssm.crover.tools.tissue.TissueSelection (implements java.lang.Comparable)
  • class edu.mssm.crover.tools.tissue.TissueSelectionHelper
  • class edu.mssm.crover.tools.tissue.TissueSummary
  • class edu.mssm.crover.tools.tissue.TIWeb_JDBCImpl (implements edu.mssm.crover.tools.tissue.TIWeb)
  • class edu.mssm.crover.tables.readers.TIWebMinesetReader
  • class edu.mssm.crover.ims.tasks.tools.TIWebUpdateScheduler
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Tm_Domain (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Tm_Segment (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.xml.TmBundle (implements java.io.Serializable)
  • class edu.mssm.crover.domain2d.rbdg.layout.xml.TmBundle (implements java.io.Serializable)
  • class edu.mssm.crover.tools.tm.TmHmmSocket (implements edu.mssm.crover.util.TmPredictor)
  • class edu.mssm.crover.tools.tm.TmHmmWeb (implements edu.mssm.crover.util.TmPredictor)
  • class edu.mssm.crover.tools.tm.tmMotif
  • class edu.mssm.crover.tools.tm.tmMotifType
  • class edu.mssm.crover.tools.tm.TmPredictors
  • class edu.mssm.crover.webapps.dimlib.util.TMValidator
  • class edu.mssm.crover.tools.tissue.xml.Tokey (implements java.io.Serializable)
  • class edu.mssm.crover.bturns.ToTurnsTableTreatmentParameter
  • class edu.mssm.crover.odmg.objectstore.Transaction (implements org.odmg.Transaction)
  • class edu.mssm.crover.ims.test.TransactionDriver
  • class edu.mssm.crover.bturns.TurnAssemblerAggregationParameter
  • class edu.mssm.crover.bturns.TurnPredictionAssembler
  • class edu.mssm.crover.domain2d.UniqueResidueModelFactory (implements edu.mssm.crover.domain2d.ResidueGlyphRenderingAttributes, edu.mssm.crover.domain2d.ResidueModelFactory)
  • class edu.mssm.crover.corba.servers.sequences.UnknownSequenceHelper
  • class edu.mssm.crover.corba.servers.sequences.UnknownSequenceHolder (implements org.omg.CORBA.portable.Streamable)
  • class edu.mssm.crover.ims.update.Updateable
    • class edu.mssm.crover.ims.update.Domains
    • class edu.mssm.crover.ims.update.TissueInformation
  • class edu.mssm.crover.ims.update.UpdateScheme
    • class edu.mssm.crover.ims.update.DomainUpdateScheme
    • class edu.mssm.crover.ims.update.TissueInfoUpdateScheme
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.Url (implements java.io.Serializable)
  • class edu.mssm.crover.scentral.URLRepositoryImpl (implements edu.mssm.crover.scentral.URLRepository)
  • class edu.mssm.crover.webservices.rbde.UserColors
  • class edu.mssm.crover.ims.users.collections.UserDirectory
  • class edu.mssm.crover.scentral.UserDirectory_JDBC_Impl (implements edu.mssm.crover.scentral.UserDirectory)
  • class edu.mssm.crover.scentral.UserDirectory_Serialization_Impl (implements edu.mssm.crover.scentral.UserDirectory)
  • class edu.mssm.crover.scentral.UserRecordImpl (implements java.io.Serializable, edu.mssm.crover.scentral.UserRecord)
  • class edu.mssm.crover.scentral.UserSession (implements javax.servlet.http.HttpSessionBindingListener, java.io.Serializable)
    • class edu.mssm.crover.webservices.rbde.DS_UserSession (implements javax.servlet.http.HttpSessionBindingListener, java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.lw.ValidateSubmission
  • class org.exolab.castor.xml.Validator (implements org.exolab.castor.xml.ClassValidator)
    • class org.exolab.castor.xml.util.XMLClassDescriptorImpl (implements org.exolab.castor.xml.XMLClassDescriptor)
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.AnnotationsDescriptor
      • class edu.mssm.crover.tools.tissue.xml.BlastHitsDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v1.BlastOutput_HitsDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v2.BlastOutput_IterationsTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v2.BlastOutput_IterationsDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v3.BlastOutput_IterationsTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v3.BlastOutput_IterationsDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v1.BlastOutput_ParamDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v2.BlastOutput_ParamTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v2.BlastOutput_ParamDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v3.BlastOutput_ParamTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v3.BlastOutput_ParamDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v1.BlastOutput_StatDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v2.BlastOutputDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v1.BlastOutputDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v3.BlastOutputDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.ChimeraDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.ColorSchemeDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.ColorsDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.ControlPointsDescriptor
      • class edu.mssm.crover.domain2d.rbdg.layout.xml.ControlPointsDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.CpointDescriptor
      • class edu.mssm.crover.domain2d.rbdg.layout.xml.CpointDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.DblinksDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.DefineDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.DeletionDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.DiagramDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.DiagramLayoutDescriptor
      • class edu.mssm.crover.domain2d.rbdg.layout.xml.DiagramLayoutDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.DimlibSubmissionDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.DirectionDescriptor
      • class edu.mssm.crover.domain2d.rbdg.layout.xml.DirectionDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.DisulfideBridgeDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.ElipsesDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.ExcludeDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.types.FormatTypeDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v1.Hit_HspsDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v2.Hit_HspsTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v2.Hit_HspsDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v3.Hit_HspsTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v3.Hit_HspsDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v1.HitDescriptor
      • class edu.mssm.crover.tools.tissue.xml.HitDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v2.HitTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v2.HitDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v3.HitTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v3.HitDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v1.HspDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v2.HspTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v2.HspDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v3.HspTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v3.HspDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.ImageDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.ImageMapDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.IncludeDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.InsertionDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v2.Iteration_HitsTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v2.Iteration_HitsDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v3.Iteration_HitsTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v3.Iteration_HitsDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v2.Iteration_StatTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v2.Iteration_StatDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v3.Iteration_StatTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v3.Iteration_StatDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v2.IterationTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v2.IterationDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v3.IterationTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v3.IterationDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.LinkDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.LinksDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.MutantDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.MutantsDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.MutationsDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.MutationsItemDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.OptionsDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.Other_ProteinDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.OutputDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.PageDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.PaperDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v1.ParametersDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v2.ParametersTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v2.ParametersDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v3.ParametersTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v3.ParametersDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.PointMutationDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.ProteinDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.ProteinDescriptor
      • class edu.mssm.crover.tools.tissue.xml.QuerySequenceDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.RbdeDiagramDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.ReferencesDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.ResidueBackgroundDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.ResidueColorDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.ResidueDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.ResidueShapeDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.SecondaryStructureDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.SegmentDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.SnpDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.SnpsDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.SpacerDescriptor
      • class edu.mssm.crover.domain2d.rbdg.layout.xml.SpacerDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v1.StatisticsDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v2.StatisticsTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v2.StatisticsDescriptor
      • class edu.mssm.crover.tools.blast.parsers.xml.v3.StatisticsTypeDescriptor
        • class edu.mssm.crover.tools.blast.parsers.xml.v3.StatisticsDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.SubmitterDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.SubunitDescriptor
      • class edu.mssm.crover.domain2d.rbdg.layout.xml.SubunitDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.SubunitRefDescriptor
      • class edu.mssm.crover.tools.tissue.xml.TissueInfoDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.Tm_DomainDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.Tm_SegmentDescriptor
      • class edu.mssm.crover.domain2d.rbdg.xml.TmBundleDescriptor
      • class edu.mssm.crover.domain2d.rbdg.layout.xml.TmBundleDescriptor
      • class edu.mssm.crover.tools.tissue.xml.TokeyDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.UrlDescriptor
      • class edu.mssm.crover.webapps.dimlib.parsers.xml.WildType_ProteinDescriptor
  • class cuttingedge.lw.form.Widget (implements java.io.Serializable, cuttingedge.lw.form.Visitee)
    • class cuttingedge.lw.form.Form
      • class edu.mssm.crover.webapps.dimlib.lw.DiMLibForm
        • class edu.mssm.crover.webapps.dimlib.lw.AddAdditionalInfoToMutant
        • class edu.mssm.crover.webapps.dimlib.lw.AlignmentModifier
        • class edu.mssm.crover.webapps.dimlib.lw.AlignmentQuery
        • class edu.mssm.crover.webapps.dimlib.lw.AlignmentSelection
        • class edu.mssm.crover.webapps.dimlib.lw.AlignmentSubSelection
        • class edu.mssm.crover.webapps.dimlib.lw.AlignmentViewer
        • class edu.mssm.crover.webapps.dimlib.lw.CompleteSubmission
        • class edu.mssm.crover.webapps.dimlib.lw.ConfirmSNP
        • class edu.mssm.crover.webapps.dimlib.lw.CreateMutant
        • class edu.mssm.crover.webapps.dimlib.lw.CreateSNP
        • class edu.mssm.crover.webapps.dimlib.lw.ExtantProteinModification
        • class edu.mssm.crover.webapps.dimlib.lw.MakeNewProteinEntry
        • class edu.mssm.crover.webapps.dimlib.lw.MutantQuery
        • class edu.mssm.crover.webapps.dimlib.lw.MutantQueryExtended
        • class edu.mssm.crover.webapps.dimlib.lw.NewAlnSubmission
        • class edu.mssm.crover.webapps.dimlib.lw.NewProteinViewer
        • class edu.mssm.crover.webapps.dimlib.lw.NewSubmission
        • class edu.mssm.crover.webapps.dimlib.lw.PaperViewer
        • class edu.mssm.crover.webapps.dimlib.lw.PersistenceTest
        • class edu.mssm.crover.webapps.dimlib.lw.ProteinSelection
        • class edu.mssm.crover.webapps.dimlib.lw.ProteinSelectionExtended
        • class edu.mssm.crover.webapps.dimlib.lw.SNPQuery
        • class edu.mssm.crover.webapps.dimlib.lw.SNPSelection
        • class edu.mssm.crover.webapps.dimlib.lw.SNPViewer
        • class edu.mssm.crover.webapps.dimlib.lw.Start
        • class edu.mssm.crover.webapps.dimlib.lw.UploadAlnFile
        • class edu.mssm.crover.webapps.dimlib.lw.UploadXMLFile
        • class edu.mssm.crover.webapps.dimlib.lw.Viewer
        • class edu.mssm.crover.webapps.dimlib.lw.WizardSubmission
        • class edu.mssm.crover.webapps.dimlib.lw.XMLSubmission
      • class edu.mssm.crover.webapps.tmprop.lw.FillIn3DFourierOptions
      • class edu.mssm.crover.webapps.tmprop.lw.FillInFourierOptions
      • class edu.mssm.crover.webapps.tmprop.lw.FillInHydroOptions
      • class edu.mssm.crover.webapps.tmprop.lw.FillInVolumeOptions
      • class edu.mssm.crover.webapps.ims.lwtest.ForEachTest
      • class edu.mssm.crover.webapps.tissueinfo.GetForm
      • class edu.mssm.crover.webapps.ims.lwtest.Hello
      • class edu.mssm.crover.webapps.ims.lwtest.HelloForm
      • class cuttingedge.lw.form.MutableForm
        • class edu.mssm.crover.webapps.ims.input.IMSGenericForm
          • class edu.mssm.crover.webapps.ims.input.IMSForm
            • class edu.mssm.crover.webapps.ims.input.CreateSubmissionForm
            • class edu.mssm.crover.webapps.ims.input.IMSUserHome
            • class edu.mssm.crover.webapps.ims.input.prototype.InputPhosphoParams
            • class edu.mssm.crover.webapps.ims.input.InsertSubmission
            • class edu.mssm.crover.webapps.ims.input.LoginForm
            • class edu.mssm.crover.webapps.ims.input.RegisterAffForm
            • class edu.mssm.crover.webapps.ims.input.RegisterUserForm
            • class edu.mssm.crover.webapps.ims.input.prototype.SearchKinase
            • class edu.mssm.crover.webapps.ims.input.prototype.SearchSelect
            • class edu.mssm.crover.webapps.ims.input.prototype.SearchSubstrate
            • class edu.mssm.crover.webapps.ims.input.prototype.SelectInteraction
            • class edu.mssm.crover.webapps.ims.input.prototype.ShowPReaction
            • class edu.mssm.crover.webapps.ims.input.SubmissionHome
            • class edu.mssm.crover.webapps.ims.input.SubmissionSearch
            • class edu.mssm.crover.webapps.ims.input.UpdateProfileForm
            • class edu.mssm.crover.webapps.ims.input.UploadFile
          • class edu.mssm.crover.webapps.ims.control.RegistrationForm
      • class edu.mssm.crover.webapps.tissueinfo.ProfileForm
      • class edu.mssm.crover.webapps.tissueinfo.ProfileSearchForm
      • class edu.mssm.crover.webapps.tissueinfo.ReportForm
      • class edu.mssm.crover.webapps.tissueinfo.SearchForm
      • class edu.mssm.crover.webapps.ims.lwtest.SwitchTest
      • class edu.mssm.crover.webapps.ims.lwtest.TestReuse
      • class edu.mssm.crover.webapps.tissueinfo.TissueInfoForm
      • class edu.mssm.crover.webapps.tissueinfo.TissueInfoStartForm
      • class edu.mssm.crover.webapps.tmprop.lw.TMPropStart
      • class edu.mssm.crover.webapps.tmprop.lw.UploadAlignment
  • class edu.mssm.crover.webapps.dimlib.parsers.xml.WildType_Protein (implements java.io.Serializable)
  • class edu.mssm.crover.webapps.dimlib.datamodel.WildTypeProtein (implements java.lang.Comparable)
  • class edu.mssm.crover.ims.tasks.tools.worker
  • class edu.mssm.crover.webapps.dimlib.util.WTPSorter
  • class edu.mssm.crover.tools.blast.XMLBlastHSIterator (implements edu.mssm.crover.tools.blast.HitSummaryIterator)
  • class edu.mssm.crover.webservices.rbde.XMLGenerator
  • class edu.mssm.crover.webapps.dimlib.util.XMLValidator

Interface Hierarchy

• interface edu.mssm.crover.domain2d.AbstractModel
  • interface edu.mssm.crover.domain2d.HelixModel (also extends edu.mssm.crover.domain2d.BrushingModelInterface, edu.mssm.crover.domain2d.DraggingModelInterface, edu.mssm.crover.domain2d.SelectedModelInterface)
• interface edu.mssm.crover.util.msaviz.AlignmentFormatter
• interface edu.mssm.crover.tools.tissue.hierarchy.all
  • interface edu.mssm.crover.tools.tissue.hierarchy.adipose
    • interface edu.mssm.crover.tools.tissue.hierarchy.brown_adipose
    • interface edu.mssm.crover.tools.tissue.hierarchy.white_adipose
  • interface edu.mssm.crover.tools.tissue.hierarchy.breast
    • interface edu.mssm.crover.tools.tissue.hierarchy.mammary_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.exocrine)
  • interface edu.mssm.crover.tools.tissue.hierarchy.ectoderm
    • interface edu.mssm.crover.tools.tissue.hierarchy.head (also extends edu.mssm.crover.tools.tissue.hierarchy.endoderm, edu.mssm.crover.tools.tissue.hierarchy.mesoderm)
      • interface edu.mssm.crover.tools.tissue.hierarchy.brain (also extends edu.mssm.crover.tools.tissue.hierarchy.central_NS)
        • interface edu.mssm.crover.tools.tissue.hierarchy.brain_stem
          • interface edu.mssm.crover.tools.tissue.hierarchy.medulla_oblongata
            • interface edu.mssm.crover.tools.tissue.hierarchy.solitary_tract
          • interface edu.mssm.crover.tools.tissue.hierarchy.pons
        • interface edu.mssm.crover.tools.tissue.hierarchy.corpus_callosum
        • interface edu.mssm.crover.tools.tissue.hierarchy.dura_mater (also extends edu.mssm.crover.tools.tissue.hierarchy.central_NS, edu.mssm.crover.tools.tissue.hierarchy.head)
        • interface edu.mssm.crover.tools.tissue.hierarchy.glia
          • interface edu.mssm.crover.tools.tissue.hierarchy.astrocyte
          • interface edu.mssm.crover.tools.tissue.hierarchy.microglia
          • interface edu.mssm.crover.tools.tissue.hierarchy.oligodendrocyte
        • interface edu.mssm.crover.tools.tissue.hierarchy.leptomeninges (also extends edu.mssm.crover.tools.tissue.hierarchy.central_NS)
          • interface edu.mssm.crover.tools.tissue.hierarchy.arachnoidea_mater
          • interface edu.mssm.crover.tools.tissue.hierarchy.pia_mater
        • interface edu.mssm.crover.tools.tissue.hierarchy.mesencephalon
          • interface edu.mssm.crover.tools.tissue.hierarchy.corpora_quadrigemina
          • interface edu.mssm.crover.tools.tissue.hierarchy.diencephalon
            • interface edu.mssm.crover.tools.tissue.hierarchy.corpus_striatum
              • interface edu.mssm.crover.tools.tissue.hierarchy.neostriatum
                • interface edu.mssm.crover.tools.tissue.hierarchy.caudate_nucleus
                • interface edu.mssm.crover.tools.tissue.hierarchy.putamen
              • interface edu.mssm.crover.tools.tissue.hierarchy.paleostriatum
            • interface edu.mssm.crover.tools.tissue.hierarchy.epithalamus
              • interface edu.mssm.crover.tools.tissue.hierarchy.pineal_gland
            • interface edu.mssm.crover.tools.tissue.hierarchy.hypothalamus
              • interface edu.mssm.crover.tools.tissue.hierarchy.pituitary (also extends edu.mssm.crover.tools.tissue.hierarchy.endocrine)
            • interface edu.mssm.crover.tools.tissue.hierarchy.nucleus_accumbens
            • interface edu.mssm.crover.tools.tissue.hierarchy.subthalamus
            • interface edu.mssm.crover.tools.tissue.hierarchy.thalamus
          • interface edu.mssm.crover.tools.tissue.hierarchy.substantia_nigra
        • interface edu.mssm.crover.tools.tissue.hierarchy.prosencephalon
          • interface edu.mssm.crover.tools.tissue.hierarchy.telencephalon
            • interface edu.mssm.crover.tools.tissue.hierarchy.cerebrum
              • interface edu.mssm.crover.tools.tissue.hierarchy.cerebral_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.amygdala
                • interface edu.mssm.crover.tools.tissue.hierarchy.entorhinal_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.frontal_lobe
                  • interface edu.mssm.crover.tools.tissue.hierarchy.frontal_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.hippocampus
                • interface edu.mssm.crover.tools.tissue.hierarchy.neocortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.occipital_lobe
                  • interface edu.mssm.crover.tools.tissue.hierarchy.visual_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.parietal_lobe
                • interface edu.mssm.crover.tools.tissue.hierarchy.temporal_lobe
                  • interface edu.mssm.crover.tools.tissue.hierarchy.temporal_cortex
              • interface edu.mssm.crover.tools.tissue.hierarchy.rhinencephalon
        • interface edu.mssm.crover.tools.tissue.hierarchy.rhombencephalon
          • interface edu.mssm.crover.tools.tissue.hierarchy.metencephalon
            • interface edu.mssm.crover.tools.tissue.hierarchy.cerebellum
          • interface edu.mssm.crover.tools.tissue.hierarchy.myelencephalon
      • interface edu.mssm.crover.tools.tissue.hierarchy.cranium (also extends edu.mssm.crover.tools.tissue.hierarchy.bone)
      • interface edu.mssm.crover.tools.tissue.hierarchy.dura_mater (also extends edu.mssm.crover.tools.tissue.hierarchy.brain, edu.mssm.crover.tools.tissue.hierarchy.central_NS)
      • interface edu.mssm.crover.tools.tissue.hierarchy.ear
        • interface edu.mssm.crover.tools.tissue.hierarchy.cochlea
        • interface edu.mssm.crover.tools.tissue.hierarchy.salivary_gland
          • interface edu.mssm.crover.tools.tissue.hierarchy.parotid
      • interface edu.mssm.crover.tools.tissue.hierarchy.eye
        • interface edu.mssm.crover.tools.tissue.hierarchy.choroid
        • interface edu.mssm.crover.tools.tissue.hierarchy.cornea
        • interface edu.mssm.crover.tools.tissue.hierarchy.iris
        • interface edu.mssm.crover.tools.tissue.hierarchy.lacrimal_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.exocrine)
        • interface edu.mssm.crover.tools.tissue.hierarchy.lens
        • interface edu.mssm.crover.tools.tissue.hierarchy.optic_nerve (also extends edu.mssm.crover.tools.tissue.hierarchy.cranial_nerves)
        • interface edu.mssm.crover.tools.tissue.hierarchy.retina
          • interface edu.mssm.crover.tools.tissue.hierarchy.cones
          • interface edu.mssm.crover.tools.tissue.hierarchy.neural_retina
          • interface edu.mssm.crover.tools.tissue.hierarchy.pigmented_retinal_epithelium
          • interface edu.mssm.crover.tools.tissue.hierarchy.rods
      • interface edu.mssm.crover.tools.tissue.hierarchy.mouth (also extends edu.mssm.crover.tools.tissue.hierarchy.gut)
        • interface edu.mssm.crover.tools.tissue.hierarchy.gum
        • interface edu.mssm.crover.tools.tissue.hierarchy.tongue
          • interface edu.mssm.crover.tools.tissue.hierarchy.circumvallate_papillae
        • interface edu.mssm.crover.tools.tissue.hierarchy.tonsil
          • interface edu.mssm.crover.tools.tissue.hierarchy.pharyngeal_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.endocrine)
        • interface edu.mssm.crover.tools.tissue.hierarchy.tooth
      • interface edu.mssm.crover.tools.tissue.hierarchy.nose (also extends edu.mssm.crover.tools.tissue.hierarchy.respiratory)
        • interface edu.mssm.crover.tools.tissue.hierarchy.vomeronasal_organ
          • interface edu.mssm.crover.tools.tissue.hierarchy.pheromone_gland
    • interface edu.mssm.crover.tools.tissue.hierarchy.nervous_system
      • interface edu.mssm.crover.tools.tissue.hierarchy.central_NS
        • interface edu.mssm.crover.tools.tissue.hierarchy.brain (also extends edu.mssm.crover.tools.tissue.hierarchy.head)
          • interface edu.mssm.crover.tools.tissue.hierarchy.brain_stem
            • interface edu.mssm.crover.tools.tissue.hierarchy.medulla_oblongata
              • interface edu.mssm.crover.tools.tissue.hierarchy.solitary_tract
            • interface edu.mssm.crover.tools.tissue.hierarchy.pons
          • interface edu.mssm.crover.tools.tissue.hierarchy.corpus_callosum
          • interface edu.mssm.crover.tools.tissue.hierarchy.dura_mater (also extends edu.mssm.crover.tools.tissue.hierarchy.central_NS, edu.mssm.crover.tools.tissue.hierarchy.head)
          • interface edu.mssm.crover.tools.tissue.hierarchy.glia
            • interface edu.mssm.crover.tools.tissue.hierarchy.astrocyte
            • interface edu.mssm.crover.tools.tissue.hierarchy.microglia
            • interface edu.mssm.crover.tools.tissue.hierarchy.oligodendrocyte
          • interface edu.mssm.crover.tools.tissue.hierarchy.leptomeninges (also extends edu.mssm.crover.tools.tissue.hierarchy.central_NS)
            • interface edu.mssm.crover.tools.tissue.hierarchy.arachnoidea_mater
            • interface edu.mssm.crover.tools.tissue.hierarchy.pia_mater
          • interface edu.mssm.crover.tools.tissue.hierarchy.mesencephalon
            • interface edu.mssm.crover.tools.tissue.hierarchy.corpora_quadrigemina
            • interface edu.mssm.crover.tools.tissue.hierarchy.diencephalon
              • interface edu.mssm.crover.tools.tissue.hierarchy.corpus_striatum
                • interface edu.mssm.crover.tools.tissue.hierarchy.neostriatum
                  • interface edu.mssm.crover.tools.tissue.hierarchy.caudate_nucleus
                  • interface edu.mssm.crover.tools.tissue.hierarchy.putamen
                • interface edu.mssm.crover.tools.tissue.hierarchy.paleostriatum
              • interface edu.mssm.crover.tools.tissue.hierarchy.epithalamus
                • interface edu.mssm.crover.tools.tissue.hierarchy.pineal_gland
              • interface edu.mssm.crover.tools.tissue.hierarchy.hypothalamus
                • interface edu.mssm.crover.tools.tissue.hierarchy.pituitary (also extends edu.mssm.crover.tools.tissue.hierarchy.endocrine)
              • interface edu.mssm.crover.tools.tissue.hierarchy.nucleus_accumbens
              • interface edu.mssm.crover.tools.tissue.hierarchy.subthalamus
              • interface edu.mssm.crover.tools.tissue.hierarchy.thalamus
            • interface edu.mssm.crover.tools.tissue.hierarchy.substantia_nigra
          • interface edu.mssm.crover.tools.tissue.hierarchy.prosencephalon
            • interface edu.mssm.crover.tools.tissue.hierarchy.telencephalon
              • interface edu.mssm.crover.tools.tissue.hierarchy.cerebrum
                • interface edu.mssm.crover.tools.tissue.hierarchy.cerebral_cortex
                  • interface edu.mssm.crover.tools.tissue.hierarchy.amygdala
                  • interface edu.mssm.crover.tools.tissue.hierarchy.entorhinal_cortex
                  • interface edu.mssm.crover.tools.tissue.hierarchy.frontal_lobe
                    • interface edu.mssm.crover.tools.tissue.hierarchy.frontal_cortex
                  • interface edu.mssm.crover.tools.tissue.hierarchy.hippocampus
                  • interface edu.mssm.crover.tools.tissue.hierarchy.neocortex
                  • interface edu.mssm.crover.tools.tissue.hierarchy.occipital_lobe
                    • interface edu.mssm.crover.tools.tissue.hierarchy.visual_cortex
                  • interface edu.mssm.crover.tools.tissue.hierarchy.parietal_lobe
                  • interface edu.mssm.crover.tools.tissue.hierarchy.temporal_lobe
                    • interface edu.mssm.crover.tools.tissue.hierarchy.temporal_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.rhinencephalon
          • interface edu.mssm.crover.tools.tissue.hierarchy.rhombencephalon
            • interface edu.mssm.crover.tools.tissue.hierarchy.metencephalon
              • interface edu.mssm.crover.tools.tissue.hierarchy.cerebellum
            • interface edu.mssm.crover.tools.tissue.hierarchy.myelencephalon
        • interface edu.mssm.crover.tools.tissue.hierarchy.dura_mater (also extends edu.mssm.crover.tools.tissue.hierarchy.brain, edu.mssm.crover.tools.tissue.hierarchy.head)
        • interface edu.mssm.crover.tools.tissue.hierarchy.leptomeninges (also extends edu.mssm.crover.tools.tissue.hierarchy.brain)
          • interface edu.mssm.crover.tools.tissue.hierarchy.arachnoidea_mater
          • interface edu.mssm.crover.tools.tissue.hierarchy.pia_mater
        • interface edu.mssm.crover.tools.tissue.hierarchy.spinal_cord
      • interface edu.mssm.crover.tools.tissue.hierarchy.ganglion
        • interface edu.mssm.crover.tools.tissue.hierarchy.neuron
          • interface edu.mssm.crover.tools.tissue.hierarchy.axon
          • interface edu.mssm.crover.tools.tissue.hierarchy.dendrite
          • interface edu.mssm.crover.tools.tissue.hierarchy.interneuron
          • interface edu.mssm.crover.tools.tissue.hierarchy.motor_neuron (also extends edu.mssm.crover.tools.tissue.hierarchy.peripheral_NS)
          • interface edu.mssm.crover.tools.tissue.hierarchy.sensory_neuron (also extends edu.mssm.crover.tools.tissue.hierarchy.peripheral_NS)
      • interface edu.mssm.crover.tools.tissue.hierarchy.peripheral_NS
        • interface edu.mssm.crover.tools.tissue.hierarchy.abdominal_ganglion
        • interface edu.mssm.crover.tools.tissue.hierarchy.autonomic_NS
          • interface edu.mssm.crover.tools.tissue.hierarchy.enteric_NS
            • interface edu.mssm.crover.tools.tissue.hierarchy.myenteric_plexus
          • interface edu.mssm.crover.tools.tissue.hierarchy.parasympathetic_NS
          • interface edu.mssm.crover.tools.tissue.hierarchy.sympathetic_NS
            • interface edu.mssm.crover.tools.tissue.hierarchy.sympathetic_ganglion
              • interface edu.mssm.crover.tools.tissue.hierarchy.coeliac_ganglion
              • interface edu.mssm.crover.tools.tissue.hierarchy.stellate_ganglion
              • interface edu.mssm.crover.tools.tissue.hierarchy.superior_cervical_ganglion
            • interface edu.mssm.crover.tools.tissue.hierarchy.thoracic_ganglion
        • interface edu.mssm.crover.tools.tissue.hierarchy.dorsal_root_ganglion
        • interface edu.mssm.crover.tools.tissue.hierarchy.motor_neuron (also extends edu.mssm.crover.tools.tissue.hierarchy.neuron)
        • interface edu.mssm.crover.tools.tissue.hierarchy.sciatic_nerve
          • interface edu.mssm.crover.tools.tissue.hierarchy.peroneal_nerve
          • interface edu.mssm.crover.tools.tissue.hierarchy.tibial_nerve
        • interface edu.mssm.crover.tools.tissue.hierarchy.sensory_neuron (also extends edu.mssm.crover.tools.tissue.hierarchy.neuron)
        • interface edu.mssm.crover.tools.tissue.hierarchy.sensory_somatic_NS
          • interface edu.mssm.crover.tools.tissue.hierarchy.cranial_nerves
            • interface edu.mssm.crover.tools.tissue.hierarchy.abducens_nerve
            • interface edu.mssm.crover.tools.tissue.hierarchy.accessory_nerve
            • interface edu.mssm.crover.tools.tissue.hierarchy.auditory_nerve
            • interface edu.mssm.crover.tools.tissue.hierarchy.facial_nerve
            • interface edu.mssm.crover.tools.tissue.hierarchy.glossopharyngeal_nerve
            • interface edu.mssm.crover.tools.tissue.hierarchy.hypoglossal_nerve
            • interface edu.mssm.crover.tools.tissue.hierarchy.oculomotor_nerve
            • interface edu.mssm.crover.tools.tissue.hierarchy.olfactory_nerve
            • interface edu.mssm.crover.tools.tissue.hierarchy.optic_nerve (also extends edu.mssm.crover.tools.tissue.hierarchy.eye)
            • interface edu.mssm.crover.tools.tissue.hierarchy.trigeminal_nerve
              • interface edu.mssm.crover.tools.tissue.hierarchy.trigeminal_ganglion
            • interface edu.mssm.crover.tools.tissue.hierarchy.trochlear_nerve
            • interface edu.mssm.crover.tools.tissue.hierarchy.vagus_nerve
          • interface edu.mssm.crover.tools.tissue.hierarchy.spinal_nerves
    • interface edu.mssm.crover.tools.tissue.hierarchy.skin
      • interface edu.mssm.crover.tools.tissue.hierarchy.epidermis
  • interface edu.mssm.crover.tools.tissue.hierarchy.endoderm
    • interface edu.mssm.crover.tools.tissue.hierarchy.digestive
      • interface edu.mssm.crover.tools.tissue.hierarchy.gut
        • interface edu.mssm.crover.tools.tissue.hierarchy.bowel
          • interface edu.mssm.crover.tools.tissue.hierarchy.large_intestine
            • interface edu.mssm.crover.tools.tissue.hierarchy.colon
              • interface edu.mssm.crover.tools.tissue.hierarchy.ascending_colon
              • interface edu.mssm.crover.tools.tissue.hierarchy.caecum
                • interface edu.mssm.crover.tools.tissue.hierarchy.appendix
              • interface edu.mssm.crover.tools.tissue.hierarchy.descending_colon
              • interface edu.mssm.crover.tools.tissue.hierarchy.rectum
              • interface edu.mssm.crover.tools.tissue.hierarchy.sigmoid_colon
              • interface edu.mssm.crover.tools.tissue.hierarchy.transverse_colon
          • interface edu.mssm.crover.tools.tissue.hierarchy.small_intestine
            • interface edu.mssm.crover.tools.tissue.hierarchy.duodenum
            • interface edu.mssm.crover.tools.tissue.hierarchy.ileum
            • interface edu.mssm.crover.tools.tissue.hierarchy.jejunum
        • interface edu.mssm.crover.tools.tissue.hierarchy.esophagus
        • interface edu.mssm.crover.tools.tissue.hierarchy.gastrocolic_omentum
        • interface edu.mssm.crover.tools.tissue.hierarchy.mouth (also extends edu.mssm.crover.tools.tissue.hierarchy.head)
          • interface edu.mssm.crover.tools.tissue.hierarchy.gum
          • interface edu.mssm.crover.tools.tissue.hierarchy.tongue
            • interface edu.mssm.crover.tools.tissue.hierarchy.circumvallate_papillae
          • interface edu.mssm.crover.tools.tissue.hierarchy.tonsil
            • interface edu.mssm.crover.tools.tissue.hierarchy.pharyngeal_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.endocrine)
          • interface edu.mssm.crover.tools.tissue.hierarchy.tooth
        • interface edu.mssm.crover.tools.tissue.hierarchy.peritoneum
        • interface edu.mssm.crover.tools.tissue.hierarchy.stomach
          • interface edu.mssm.crover.tools.tissue.hierarchy.pylorus
      • interface edu.mssm.crover.tools.tissue.hierarchy.liver
        • interface edu.mssm.crover.tools.tissue.hierarchy.gall_bladder
      • interface edu.mssm.crover.tools.tissue.hierarchy.pancreas
        • interface edu.mssm.crover.tools.tissue.hierarchy.pancreatic_islets
    • interface edu.mssm.crover.tools.tissue.hierarchy.head (also extends edu.mssm.crover.tools.tissue.hierarchy.ectoderm, edu.mssm.crover.tools.tissue.hierarchy.mesoderm)
      • interface edu.mssm.crover.tools.tissue.hierarchy.brain (also extends edu.mssm.crover.tools.tissue.hierarchy.central_NS)
        • interface edu.mssm.crover.tools.tissue.hierarchy.brain_stem
          • interface edu.mssm.crover.tools.tissue.hierarchy.medulla_oblongata
            • interface edu.mssm.crover.tools.tissue.hierarchy.solitary_tract
          • interface edu.mssm.crover.tools.tissue.hierarchy.pons
        • interface edu.mssm.crover.tools.tissue.hierarchy.corpus_callosum
        • interface edu.mssm.crover.tools.tissue.hierarchy.dura_mater (also extends edu.mssm.crover.tools.tissue.hierarchy.central_NS, edu.mssm.crover.tools.tissue.hierarchy.head)
        • interface edu.mssm.crover.tools.tissue.hierarchy.glia
          • interface edu.mssm.crover.tools.tissue.hierarchy.astrocyte
          • interface edu.mssm.crover.tools.tissue.hierarchy.microglia
          • interface edu.mssm.crover.tools.tissue.hierarchy.oligodendrocyte
        • interface edu.mssm.crover.tools.tissue.hierarchy.leptomeninges (also extends edu.mssm.crover.tools.tissue.hierarchy.central_NS)
          • interface edu.mssm.crover.tools.tissue.hierarchy.arachnoidea_mater
          • interface edu.mssm.crover.tools.tissue.hierarchy.pia_mater
        • interface edu.mssm.crover.tools.tissue.hierarchy.mesencephalon
          • interface edu.mssm.crover.tools.tissue.hierarchy.corpora_quadrigemina
          • interface edu.mssm.crover.tools.tissue.hierarchy.diencephalon
            • interface edu.mssm.crover.tools.tissue.hierarchy.corpus_striatum
              • interface edu.mssm.crover.tools.tissue.hierarchy.neostriatum
                • interface edu.mssm.crover.tools.tissue.hierarchy.caudate_nucleus
                • interface edu.mssm.crover.tools.tissue.hierarchy.putamen
              • interface edu.mssm.crover.tools.tissue.hierarchy.paleostriatum
            • interface edu.mssm.crover.tools.tissue.hierarchy.epithalamus
              • interface edu.mssm.crover.tools.tissue.hierarchy.pineal_gland
            • interface edu.mssm.crover.tools.tissue.hierarchy.hypothalamus
              • interface edu.mssm.crover.tools.tissue.hierarchy.pituitary (also extends edu.mssm.crover.tools.tissue.hierarchy.endocrine)
            • interface edu.mssm.crover.tools.tissue.hierarchy.nucleus_accumbens
            • interface edu.mssm.crover.tools.tissue.hierarchy.subthalamus
            • interface edu.mssm.crover.tools.tissue.hierarchy.thalamus
          • interface edu.mssm.crover.tools.tissue.hierarchy.substantia_nigra
        • interface edu.mssm.crover.tools.tissue.hierarchy.prosencephalon
          • interface edu.mssm.crover.tools.tissue.hierarchy.telencephalon
            • interface edu.mssm.crover.tools.tissue.hierarchy.cerebrum
              • interface edu.mssm.crover.tools.tissue.hierarchy.cerebral_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.amygdala
                • interface edu.mssm.crover.tools.tissue.hierarchy.entorhinal_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.frontal_lobe
                  • interface edu.mssm.crover.tools.tissue.hierarchy.frontal_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.hippocampus
                • interface edu.mssm.crover.tools.tissue.hierarchy.neocortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.occipital_lobe
                  • interface edu.mssm.crover.tools.tissue.hierarchy.visual_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.parietal_lobe
                • interface edu.mssm.crover.tools.tissue.hierarchy.temporal_lobe
                  • interface edu.mssm.crover.tools.tissue.hierarchy.temporal_cortex
              • interface edu.mssm.crover.tools.tissue.hierarchy.rhinencephalon
        • interface edu.mssm.crover.tools.tissue.hierarchy.rhombencephalon
          • interface edu.mssm.crover.tools.tissue.hierarchy.metencephalon
            • interface edu.mssm.crover.tools.tissue.hierarchy.cerebellum
          • interface edu.mssm.crover.tools.tissue.hierarchy.myelencephalon
      • interface edu.mssm.crover.tools.tissue.hierarchy.cranium (also extends edu.mssm.crover.tools.tissue.hierarchy.bone)
      • interface edu.mssm.crover.tools.tissue.hierarchy.dura_mater (also extends edu.mssm.crover.tools.tissue.hierarchy.brain, edu.mssm.crover.tools.tissue.hierarchy.central_NS)
      • interface edu.mssm.crover.tools.tissue.hierarchy.ear
        • interface edu.mssm.crover.tools.tissue.hierarchy.cochlea
        • interface edu.mssm.crover.tools.tissue.hierarchy.salivary_gland
          • interface edu.mssm.crover.tools.tissue.hierarchy.parotid
      • interface edu.mssm.crover.tools.tissue.hierarchy.eye
        • interface edu.mssm.crover.tools.tissue.hierarchy.choroid
        • interface edu.mssm.crover.tools.tissue.hierarchy.cornea
        • interface edu.mssm.crover.tools.tissue.hierarchy.iris
        • interface edu.mssm.crover.tools.tissue.hierarchy.lacrimal_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.exocrine)
        • interface edu.mssm.crover.tools.tissue.hierarchy.lens
        • interface edu.mssm.crover.tools.tissue.hierarchy.optic_nerve (also extends edu.mssm.crover.tools.tissue.hierarchy.cranial_nerves)
        • interface edu.mssm.crover.tools.tissue.hierarchy.retina
          • interface edu.mssm.crover.tools.tissue.hierarchy.cones
          • interface edu.mssm.crover.tools.tissue.hierarchy.neural_retina
          • interface edu.mssm.crover.tools.tissue.hierarchy.pigmented_retinal_epithelium
          • interface edu.mssm.crover.tools.tissue.hierarchy.rods
      • interface edu.mssm.crover.tools.tissue.hierarchy.mouth (also extends edu.mssm.crover.tools.tissue.hierarchy.gut)
        • interface edu.mssm.crover.tools.tissue.hierarchy.gum
        • interface edu.mssm.crover.tools.tissue.hierarchy.tongue
          • interface edu.mssm.crover.tools.tissue.hierarchy.circumvallate_papillae
        • interface edu.mssm.crover.tools.tissue.hierarchy.tonsil
          • interface edu.mssm.crover.tools.tissue.hierarchy.pharyngeal_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.endocrine)
        • interface edu.mssm.crover.tools.tissue.hierarchy.tooth
      • interface edu.mssm.crover.tools.tissue.hierarchy.nose (also extends edu.mssm.crover.tools.tissue.hierarchy.respiratory)
        • interface edu.mssm.crover.tools.tissue.hierarchy.vomeronasal_organ
          • interface edu.mssm.crover.tools.tissue.hierarchy.pheromone_gland
    • interface edu.mssm.crover.tools.tissue.hierarchy.respiratory
      • interface edu.mssm.crover.tools.tissue.hierarchy.diaphragm (also extends edu.mssm.crover.tools.tissue.hierarchy.skeletal_muscle)
      • interface edu.mssm.crover.tools.tissue.hierarchy.larynx
        • interface edu.mssm.crover.tools.tissue.hierarchy.vocal_cord
      • interface edu.mssm.crover.tools.tissue.hierarchy.lung
        • interface edu.mssm.crover.tools.tissue.hierarchy.alveoli
        • interface edu.mssm.crover.tools.tissue.hierarchy.bronchii
      • interface edu.mssm.crover.tools.tissue.hierarchy.nose (also extends edu.mssm.crover.tools.tissue.hierarchy.head)
        • interface edu.mssm.crover.tools.tissue.hierarchy.vomeronasal_organ
          • interface edu.mssm.crover.tools.tissue.hierarchy.pheromone_gland
      • interface edu.mssm.crover.tools.tissue.hierarchy.pharynx
      • interface edu.mssm.crover.tools.tissue.hierarchy.trachea
  • interface edu.mssm.crover.tools.tissue.hierarchy.epithelium
  • interface edu.mssm.crover.tools.tissue.hierarchy.gland
    • interface edu.mssm.crover.tools.tissue.hierarchy.endocrine
      • interface edu.mssm.crover.tools.tissue.hierarchy.adrenal_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.kidney)
      • interface edu.mssm.crover.tools.tissue.hierarchy.ovary (also extends edu.mssm.crover.tools.tissue.hierarchy.gonad)
        • interface edu.mssm.crover.tools.tissue.hierarchy.corpus_luteum
        • interface edu.mssm.crover.tools.tissue.hierarchy.fallopian_tube
      • interface edu.mssm.crover.tools.tissue.hierarchy.parathyroid
        • interface edu.mssm.crover.tools.tissue.hierarchy.inferior_parathyroid
        • interface edu.mssm.crover.tools.tissue.hierarchy.superior_parathyroid
      • interface edu.mssm.crover.tools.tissue.hierarchy.pharyngeal_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.tonsil)
      • interface edu.mssm.crover.tools.tissue.hierarchy.pituitary (also extends edu.mssm.crover.tools.tissue.hierarchy.hypothalamus)
      • interface edu.mssm.crover.tools.tissue.hierarchy.placenta (also extends edu.mssm.crover.tools.tissue.hierarchy.urogenital)
      • interface edu.mssm.crover.tools.tissue.hierarchy.testis (also extends edu.mssm.crover.tools.tissue.hierarchy.gonad)
        • interface edu.mssm.crover.tools.tissue.hierarchy.epididymis
        • interface edu.mssm.crover.tools.tissue.hierarchy.seminiferous_tubules
        • interface edu.mssm.crover.tools.tissue.hierarchy.sperm
        • interface edu.mssm.crover.tools.tissue.hierarchy.vas_deferens
      • interface edu.mssm.crover.tools.tissue.hierarchy.thyroid
    • interface edu.mssm.crover.tools.tissue.hierarchy.exocrine
      • interface edu.mssm.crover.tools.tissue.hierarchy.lacrimal_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.eye)
      • interface edu.mssm.crover.tools.tissue.hierarchy.mammary_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.breast)
      • interface edu.mssm.crover.tools.tissue.hierarchy.sebaceous_gland
      • interface edu.mssm.crover.tools.tissue.hierarchy.vesicular_gland
  • interface edu.mssm.crover.tools.tissue.hierarchy.mesoderm
    • interface edu.mssm.crover.tools.tissue.hierarchy.bone
      • interface edu.mssm.crover.tools.tissue.hierarchy.bone_marrow (also extends edu.mssm.crover.tools.tissue.hierarchy.lymphatic)
      • interface edu.mssm.crover.tools.tissue.hierarchy.cranium (also extends edu.mssm.crover.tools.tissue.hierarchy.head)
    • interface edu.mssm.crover.tools.tissue.hierarchy.circulatory
      • interface edu.mssm.crover.tools.tissue.hierarchy.blood (also extends edu.mssm.crover.tools.tissue.hierarchy.vascular)
        • interface edu.mssm.crover.tools.tissue.hierarchy.plasma
          • interface edu.mssm.crover.tools.tissue.hierarchy.serum
        • interface edu.mssm.crover.tools.tissue.hierarchy.platelet
        • interface edu.mssm.crover.tools.tissue.hierarchy.red_blood_cell
        • interface edu.mssm.crover.tools.tissue.hierarchy.white_blood_cell (also extends edu.mssm.crover.tools.tissue.hierarchy.lymph)
          • interface edu.mssm.crover.tools.tissue.hierarchy.leukocyte
            • interface edu.mssm.crover.tools.tissue.hierarchy.agranulocyte
              • interface edu.mssm.crover.tools.tissue.hierarchy.lymphocyte
                • interface edu.mssm.crover.tools.tissue.hierarchy.b_cell
                • interface edu.mssm.crover.tools.tissue.hierarchy.t_cell
              • interface edu.mssm.crover.tools.tissue.hierarchy.monocyte
                • interface edu.mssm.crover.tools.tissue.hierarchy.macrophage
                  • interface edu.mssm.crover.tools.tissue.hierarchy.alveolar_macrophage
                  • interface edu.mssm.crover.tools.tissue.hierarchy.histiocyte
                  • interface edu.mssm.crover.tools.tissue.hierarchy.kupffer_cell
                  • interface edu.mssm.crover.tools.tissue.hierarchy.osteoclast
                  • interface edu.mssm.crover.tools.tissue.hierarchy.peritoneal_macrophage
            • interface edu.mssm.crover.tools.tissue.hierarchy.granulocyte
              • interface edu.mssm.crover.tools.tissue.hierarchy.basophil
              • interface edu.mssm.crover.tools.tissue.hierarchy.eosinophil
              • interface edu.mssm.crover.tools.tissue.hierarchy.neutrophil
          • interface edu.mssm.crover.tools.tissue.hierarchy.splenocyte (also extends edu.mssm.crover.tools.tissue.hierarchy.spleen)
      • interface edu.mssm.crover.tools.tissue.hierarchy.blood_vessel (also extends edu.mssm.crover.tools.tissue.hierarchy.smooth_muscle)
        • interface edu.mssm.crover.tools.tissue.hierarchy.artery
          • interface edu.mssm.crover.tools.tissue.hierarchy.aorta
        • interface edu.mssm.crover.tools.tissue.hierarchy.vein
      • interface edu.mssm.crover.tools.tissue.hierarchy.heart (also extends edu.mssm.crover.tools.tissue.hierarchy.cardiac_muscle)
        • interface edu.mssm.crover.tools.tissue.hierarchy.atrium
        • interface edu.mssm.crover.tools.tissue.hierarchy.ventricle
    • interface edu.mssm.crover.tools.tissue.hierarchy.connective_tissue
      • interface edu.mssm.crover.tools.tissue.hierarchy.cartilage
      • interface edu.mssm.crover.tools.tissue.hierarchy.fibroblast
      • interface edu.mssm.crover.tools.tissue.hierarchy.synovium
        • interface edu.mssm.crover.tools.tissue.hierarchy.synovia
    • interface edu.mssm.crover.tools.tissue.hierarchy.head (also extends edu.mssm.crover.tools.tissue.hierarchy.ectoderm, edu.mssm.crover.tools.tissue.hierarchy.endoderm)
      • interface edu.mssm.crover.tools.tissue.hierarchy.brain (also extends edu.mssm.crover.tools.tissue.hierarchy.central_NS)
        • interface edu.mssm.crover.tools.tissue.hierarchy.brain_stem
          • interface edu.mssm.crover.tools.tissue.hierarchy.medulla_oblongata
            • interface edu.mssm.crover.tools.tissue.hierarchy.solitary_tract
          • interface edu.mssm.crover.tools.tissue.hierarchy.pons
        • interface edu.mssm.crover.tools.tissue.hierarchy.corpus_callosum
        • interface edu.mssm.crover.tools.tissue.hierarchy.dura_mater (also extends edu.mssm.crover.tools.tissue.hierarchy.central_NS, edu.mssm.crover.tools.tissue.hierarchy.head)
        • interface edu.mssm.crover.tools.tissue.hierarchy.glia
          • interface edu.mssm.crover.tools.tissue.hierarchy.astrocyte
          • interface edu.mssm.crover.tools.tissue.hierarchy.microglia
          • interface edu.mssm.crover.tools.tissue.hierarchy.oligodendrocyte
        • interface edu.mssm.crover.tools.tissue.hierarchy.leptomeninges (also extends edu.mssm.crover.tools.tissue.hierarchy.central_NS)
          • interface edu.mssm.crover.tools.tissue.hierarchy.arachnoidea_mater
          • interface edu.mssm.crover.tools.tissue.hierarchy.pia_mater
        • interface edu.mssm.crover.tools.tissue.hierarchy.mesencephalon
          • interface edu.mssm.crover.tools.tissue.hierarchy.corpora_quadrigemina
          • interface edu.mssm.crover.tools.tissue.hierarchy.diencephalon
            • interface edu.mssm.crover.tools.tissue.hierarchy.corpus_striatum
              • interface edu.mssm.crover.tools.tissue.hierarchy.neostriatum
                • interface edu.mssm.crover.tools.tissue.hierarchy.caudate_nucleus
                • interface edu.mssm.crover.tools.tissue.hierarchy.putamen
              • interface edu.mssm.crover.tools.tissue.hierarchy.paleostriatum
            • interface edu.mssm.crover.tools.tissue.hierarchy.epithalamus
              • interface edu.mssm.crover.tools.tissue.hierarchy.pineal_gland
            • interface edu.mssm.crover.tools.tissue.hierarchy.hypothalamus
              • interface edu.mssm.crover.tools.tissue.hierarchy.pituitary (also extends edu.mssm.crover.tools.tissue.hierarchy.endocrine)
            • interface edu.mssm.crover.tools.tissue.hierarchy.nucleus_accumbens
            • interface edu.mssm.crover.tools.tissue.hierarchy.subthalamus
            • interface edu.mssm.crover.tools.tissue.hierarchy.thalamus
          • interface edu.mssm.crover.tools.tissue.hierarchy.substantia_nigra
        • interface edu.mssm.crover.tools.tissue.hierarchy.prosencephalon
          • interface edu.mssm.crover.tools.tissue.hierarchy.telencephalon
            • interface edu.mssm.crover.tools.tissue.hierarchy.cerebrum
              • interface edu.mssm.crover.tools.tissue.hierarchy.cerebral_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.amygdala
                • interface edu.mssm.crover.tools.tissue.hierarchy.entorhinal_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.frontal_lobe
                  • interface edu.mssm.crover.tools.tissue.hierarchy.frontal_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.hippocampus
                • interface edu.mssm.crover.tools.tissue.hierarchy.neocortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.occipital_lobe
                  • interface edu.mssm.crover.tools.tissue.hierarchy.visual_cortex
                • interface edu.mssm.crover.tools.tissue.hierarchy.parietal_lobe
                • interface edu.mssm.crover.tools.tissue.hierarchy.temporal_lobe
                  • interface edu.mssm.crover.tools.tissue.hierarchy.temporal_cortex
              • interface edu.mssm.crover.tools.tissue.hierarchy.rhinencephalon
        • interface edu.mssm.crover.tools.tissue.hierarchy.rhombencephalon
          • interface edu.mssm.crover.tools.tissue.hierarchy.metencephalon
            • interface edu.mssm.crover.tools.tissue.hierarchy.cerebellum
          • interface edu.mssm.crover.tools.tissue.hierarchy.myelencephalon
      • interface edu.mssm.crover.tools.tissue.hierarchy.cranium (also extends edu.mssm.crover.tools.tissue.hierarchy.bone)
      • interface edu.mssm.crover.tools.tissue.hierarchy.dura_mater (also extends edu.mssm.crover.tools.tissue.hierarchy.brain, edu.mssm.crover.tools.tissue.hierarchy.central_NS)
      • interface edu.mssm.crover.tools.tissue.hierarchy.ear
        • interface edu.mssm.crover.tools.tissue.hierarchy.cochlea
        • interface edu.mssm.crover.tools.tissue.hierarchy.salivary_gland
          • interface edu.mssm.crover.tools.tissue.hierarchy.parotid
      • interface edu.mssm.crover.tools.tissue.hierarchy.eye
        • interface edu.mssm.crover.tools.tissue.hierarchy.choroid
        • interface edu.mssm.crover.tools.tissue.hierarchy.cornea
        • interface edu.mssm.crover.tools.tissue.hierarchy.iris
        • interface edu.mssm.crover.tools.tissue.hierarchy.lacrimal_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.exocrine)
        • interface edu.mssm.crover.tools.tissue.hierarchy.lens
        • interface edu.mssm.crover.tools.tissue.hierarchy.optic_nerve (also extends edu.mssm.crover.tools.tissue.hierarchy.cranial_nerves)
        • interface edu.mssm.crover.tools.tissue.hierarchy.retina
          • interface edu.mssm.crover.tools.tissue.hierarchy.cones
          • interface edu.mssm.crover.tools.tissue.hierarchy.neural_retina
          • interface edu.mssm.crover.tools.tissue.hierarchy.pigmented_retinal_epithelium
          • interface edu.mssm.crover.tools.tissue.hierarchy.rods
      • interface edu.mssm.crover.tools.tissue.hierarchy.mouth (also extends edu.mssm.crover.tools.tissue.hierarchy.gut)
        • interface edu.mssm.crover.tools.tissue.hierarchy.gum
        • interface edu.mssm.crover.tools.tissue.hierarchy.tongue
          • interface edu.mssm.crover.tools.tissue.hierarchy.circumvallate_papillae
        • interface edu.mssm.crover.tools.tissue.hierarchy.tonsil
          • interface edu.mssm.crover.tools.tissue.hierarchy.pharyngeal_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.endocrine)
        • interface edu.mssm.crover.tools.tissue.hierarchy.tooth
      • interface edu.mssm.crover.tools.tissue.hierarchy.nose (also extends edu.mssm.crover.tools.tissue.hierarchy.respiratory)
        • interface edu.mssm.crover.tools.tissue.hierarchy.vomeronasal_organ
          • interface edu.mssm.crover.tools.tissue.hierarchy.pheromone_gland
    • interface edu.mssm.crover.tools.tissue.hierarchy.lymphatic
      • interface edu.mssm.crover.tools.tissue.hierarchy.bone_marrow (also extends edu.mssm.crover.tools.tissue.hierarchy.bone)
      • interface edu.mssm.crover.tools.tissue.hierarchy.lymph (also extends edu.mssm.crover.tools.tissue.hierarchy.vascular)
        • interface edu.mssm.crover.tools.tissue.hierarchy.white_blood_cell (also extends edu.mssm.crover.tools.tissue.hierarchy.blood)
          • interface edu.mssm.crover.tools.tissue.hierarchy.leukocyte
            • interface edu.mssm.crover.tools.tissue.hierarchy.agranulocyte
              • interface edu.mssm.crover.tools.tissue.hierarchy.lymphocyte
                • interface edu.mssm.crover.tools.tissue.hierarchy.b_cell
                • interface edu.mssm.crover.tools.tissue.hierarchy.t_cell
              • interface edu.mssm.crover.tools.tissue.hierarchy.monocyte
                • interface edu.mssm.crover.tools.tissue.hierarchy.macrophage
                  • interface edu.mssm.crover.tools.tissue.hierarchy.alveolar_macrophage
                  • interface edu.mssm.crover.tools.tissue.hierarchy.histiocyte
                  • interface edu.mssm.crover.tools.tissue.hierarchy.kupffer_cell
                  • interface edu.mssm.crover.tools.tissue.hierarchy.osteoclast
                  • interface edu.mssm.crover.tools.tissue.hierarchy.peritoneal_macrophage
            • interface edu.mssm.crover.tools.tissue.hierarchy.granulocyte
              • interface edu.mssm.crover.tools.tissue.hierarchy.basophil
              • interface edu.mssm.crover.tools.tissue.hierarchy.eosinophil
              • interface edu.mssm.crover.tools.tissue.hierarchy.neutrophil
          • interface edu.mssm.crover.tools.tissue.hierarchy.splenocyte (also extends edu.mssm.crover.tools.tissue.hierarchy.spleen)
      • interface edu.mssm.crover.tools.tissue.hierarchy.lymph_node
      • interface edu.mssm.crover.tools.tissue.hierarchy.spleen
        • interface edu.mssm.crover.tools.tissue.hierarchy.splenocyte (also extends edu.mssm.crover.tools.tissue.hierarchy.white_blood_cell)
      • interface edu.mssm.crover.tools.tissue.hierarchy.thymus
    • interface edu.mssm.crover.tools.tissue.hierarchy.muscle
      • interface edu.mssm.crover.tools.tissue.hierarchy.smooth_muscle
        • interface edu.mssm.crover.tools.tissue.hierarchy.blood_vessel (also extends edu.mssm.crover.tools.tissue.hierarchy.circulatory)
          • interface edu.mssm.crover.tools.tissue.hierarchy.artery
            • interface edu.mssm.crover.tools.tissue.hierarchy.aorta
          • interface edu.mssm.crover.tools.tissue.hierarchy.vein
        • interface edu.mssm.crover.tools.tissue.hierarchy.uterus (also extends edu.mssm.crover.tools.tissue.hierarchy.urogenital)
          • interface edu.mssm.crover.tools.tissue.hierarchy.amnion
          • interface edu.mssm.crover.tools.tissue.hierarchy.cervix
          • interface edu.mssm.crover.tools.tissue.hierarchy.endometrium
          • interface edu.mssm.crover.tools.tissue.hierarchy.myometrium
          • interface edu.mssm.crover.tools.tissue.hierarchy.oviduct
      • interface edu.mssm.crover.tools.tissue.hierarchy.striated_muscle
        • interface edu.mssm.crover.tools.tissue.hierarchy.cardiac_muscle
          • interface edu.mssm.crover.tools.tissue.hierarchy.heart (also extends edu.mssm.crover.tools.tissue.hierarchy.circulatory)
            • interface edu.mssm.crover.tools.tissue.hierarchy.atrium
            • interface edu.mssm.crover.tools.tissue.hierarchy.ventricle
        • interface edu.mssm.crover.tools.tissue.hierarchy.skeletal_muscle
          • interface edu.mssm.crover.tools.tissue.hierarchy.diaphragm (also extends edu.mssm.crover.tools.tissue.hierarchy.respiratory)
    • interface edu.mssm.crover.tools.tissue.hierarchy.urogenital
      • interface edu.mssm.crover.tools.tissue.hierarchy.bladder
      • interface edu.mssm.crover.tools.tissue.hierarchy.gonad
        • interface edu.mssm.crover.tools.tissue.hierarchy.ovary (also extends edu.mssm.crover.tools.tissue.hierarchy.endocrine)
          • interface edu.mssm.crover.tools.tissue.hierarchy.corpus_luteum
          • interface edu.mssm.crover.tools.tissue.hierarchy.fallopian_tube
        • interface edu.mssm.crover.tools.tissue.hierarchy.testis (also extends edu.mssm.crover.tools.tissue.hierarchy.endocrine)
          • interface edu.mssm.crover.tools.tissue.hierarchy.epididymis
          • interface edu.mssm.crover.tools.tissue.hierarchy.seminiferous_tubules
          • interface edu.mssm.crover.tools.tissue.hierarchy.sperm
          • interface edu.mssm.crover.tools.tissue.hierarchy.vas_deferens
      • interface edu.mssm.crover.tools.tissue.hierarchy.kidney
        • interface edu.mssm.crover.tools.tissue.hierarchy.adrenal_cortex
        • interface edu.mssm.crover.tools.tissue.hierarchy.adrenal_gland (also extends edu.mssm.crover.tools.tissue.hierarchy.endocrine)
        • interface edu.mssm.crover.tools.tissue.hierarchy.glomerulus
      • interface edu.mssm.crover.tools.tissue.hierarchy.penis
      • interface edu.mssm.crover.tools.tissue.hierarchy.placenta (also extends edu.mssm.crover.tools.tissue.hierarchy.endocrine)
      • interface edu.mssm.crover.tools.tissue.hierarchy.prostate
      • interface edu.mssm.crover.tools.tissue.hierarchy.ureter
      • interface edu.mssm.crover.tools.tissue.hierarchy.uterus (also extends edu.mssm.crover.tools.tissue.hierarchy.smooth_muscle)
        • interface edu.mssm.crover.tools.tissue.hierarchy.amnion
        • interface edu.mssm.crover.tools.tissue.hierarchy.cervix
        • interface edu.mssm.crover.tools.tissue.hierarchy.endometrium
        • interface edu.mssm.crover.tools.tissue.hierarchy.myometrium
        • interface edu.mssm.crover.tools.tissue.hierarchy.oviduct
      • interface edu.mssm.crover.tools.tissue.hierarchy.vagina
      • interface edu.mssm.crover.tools.tissue.hierarchy.vulva
    • interface edu.mssm.crover.tools.tissue.hierarchy.vascular
      • interface edu.mssm.crover.tools.tissue.hierarchy.blood (also extends edu.mssm.crover.tools.tissue.hierarchy.circulatory)
        • interface edu.mssm.crover.tools.tissue.hierarchy.plasma
          • interface edu.mssm.crover.tools.tissue.hierarchy.serum
        • interface edu.mssm.crover.tools.tissue.hierarchy.platelet
        • interface edu.mssm.crover.tools.tissue.hierarchy.red_blood_cell
        • interface edu.mssm.crover.tools.tissue.hierarchy.white_blood_cell (also extends edu.mssm.crover.tools.tissue.hierarchy.lymph)
          • interface edu.mssm.crover.tools.tissue.hierarchy.leukocyte
            • interface edu.mssm.crover.tools.tissue.hierarchy.agranulocyte
              • interface edu.mssm.crover.tools.tissue.hierarchy.lymphocyte
                • interface edu.mssm.crover.tools.tissue.hierarchy.b_cell
                • interface edu.mssm.crover.tools.tissue.hierarchy.t_cell
              • interface edu.mssm.crover.tools.tissue.hierarchy.monocyte
                • interface edu.mssm.crover.tools.tissue.hierarchy.macrophage
                  • interface edu.mssm.crover.tools.tissue.hierarchy.alveolar_macrophage
                  • interface edu.mssm.crover.tools.tissue.hierarchy.histiocyte
                  • interface edu.mssm.crover.tools.tissue.hierarchy.kupffer_cell
                  • interface edu.mssm.crover.tools.tissue.hierarchy.osteoclast
                  • interface edu.mssm.crover.tools.tissue.hierarchy.peritoneal_macrophage
            • interface edu.mssm.crover.tools.tissue.hierarchy.granulocyte
              • interface edu.mssm.crover.tools.tissue.hierarchy.basophil
              • interface edu.mssm.crover.tools.tissue.hierarchy.eosinophil
              • interface edu.mssm.crover.tools.tissue.hierarchy.neutrophil
          • interface edu.mssm.crover.tools.tissue.hierarchy.splenocyte (also extends edu.mssm.crover.tools.tissue.hierarchy.spleen)
      • interface edu.mssm.crover.tools.tissue.hierarchy.lymph (also extends edu.mssm.crover.tools.tissue.hierarchy.lymphatic)
        • interface edu.mssm.crover.tools.tissue.hierarchy.white_blood_cell (also extends edu.mssm.crover.tools.tissue.hierarchy.blood)
          • interface edu.mssm.crover.tools.tissue.hierarchy.leukocyte
            • interface edu.mssm.crover.tools.tissue.hierarchy.agranulocyte
              • interface edu.mssm.crover.tools.tissue.hierarchy.lymphocyte
                • interface edu.mssm.crover.tools.tissue.hierarchy.b_cell
                • interface edu.mssm.crover.tools.tissue.hierarchy.t_cell
              • interface edu.mssm.crover.tools.tissue.hierarchy.monocyte
                • interface edu.mssm.crover.tools.tissue.hierarchy.macrophage
                  • interface edu.mssm.crover.tools.tissue.hierarchy.alveolar_macrophage
                  • interface edu.mssm.crover.tools.tissue.hierarchy.histiocyte
                  • interface edu.mssm.crover.tools.tissue.hierarchy.kupffer_cell
                  • interface edu.mssm.crover.tools.tissue.hierarchy.osteoclast
                  • interface edu.mssm.crover.tools.tissue.hierarchy.peritoneal_macrophage
            • interface edu.mssm.crover.tools.tissue.hierarchy.granulocyte
              • interface edu.mssm.crover.tools.tissue.hierarchy.basophil
              • interface edu.mssm.crover.tools.tissue.hierarchy.eosinophil
              • interface edu.mssm.crover.tools.tissue.hierarchy.neutrophil
          • interface edu.mssm.crover.tools.tissue.hierarchy.splenocyte (also extends edu.mssm.crover.tools.tissue.hierarchy.spleen)
• interface edu.mssm.crover.domain2d.AnnotationParser
• interface edu.mssm.crover.domain2d.AnnotationsToDrawings
• interface edu.mssm.crover.representation.AnnotationSupport
  • interface edu.mssm.crover.representation.AnnotatedBioSequence (also extends edu.mssm.crover.representation.BiologicalSequence)
• interface edu.mssm.crover.domain2d.BrushingModelInterface
  • interface edu.mssm.crover.domain2d.HelixModel (also extends edu.mssm.crover.domain2d.AbstractModel, edu.mssm.crover.domain2d.DraggingModelInterface, edu.mssm.crover.domain2d.SelectedModelInterface)
• interface java.lang.Cloneable
  • interface edu.mssm.crover.tables.Table.RowIterator
• interface edu.mssm.crover.domain2d.ConstrainedPoint
• interface edu.mssm.crover.domain2d.CoolPrint
• interface edu.mssm.crover.domain2d.CoolPrintRescale
• interface edu.mssm.crover.domain2d.DraggingModelInterface
  • interface edu.mssm.crover.domain2d.HelixModel (also extends edu.mssm.crover.domain2d.AbstractModel, edu.mssm.crover.domain2d.BrushingModelInterface, edu.mssm.crover.domain2d.SelectedModelInterface)
• interface edu.mssm.crover.domain2d.Drawing
  • interface edu.mssm.crover.domain2d.Domain2D
• interface java.util.EventListener
  • interface edu.mssm.crover.beans.TabFocusListener
• interface edu.mssm.crover.webapps.dimlib.datamodel.ExternalReferences
• interface edu.mssm.crover.sigpath.datamodel.ExternalReferences
• interface edu.mssm.crover.tables.Filter
• interface edu.mssm.crover.util.GeneProductPredictor
• interface edu.mssm.crover.domain2d.GlyphLink
• interface edu.mssm.crover.joe.Joe
• interface edu.mssm.crover.joe.JoeTool
• interface edu.mssm.crover.webapps.dimlib.datamodel.LiteratureReference
• interface edu.mssm.crover.webapps.dimlib.datamodel.LiteratureReferences
• interface edu.mssm.crover.tools.mapstrength.Locus
• interface edu.mssm.crover.joe.Log
• interface edu.mssm.crover.domain2d.LoopTemplate
• interface edu.mssm.crover.domain2d.LoopTemplateSelector
• interface edu.mssm.crover.mutations.drivers.MutationDriver
• interface edu.mssm.crover.mutations.drivers.MutationDriverFactory
• interface org.omg.CORBA.Object
  • interface edu.mssm.crover.corba.servers.sequences.SequenceRepository
• interface edu.mssm.crover.scentral.PersistenceScheme
  • interface edu.mssm.crover.webservices.rbde.DS_PersistenceScheme
• interface edu.mssm.crover.imports.ReaderType
• interface java.rmi.Remote
  • interface edu.mssm.crover.ims.tasks.rmi.TaskManagerRMIServer
• interface edu.mssm.crover.domain2d.ResidueColorScheme
• interface edu.mssm.crover.util.ResidueExchangeMatrix
• interface edu.mssm.crover.domain2d.ResidueGlyphFactory
• interface edu.mssm.crover.domain2d.ResidueGlyphRenderingAttributes
  • interface edu.mssm.crover.domain2d.ResidueModelFactory
• interface edu.mssm.crover.representation.RootObject
  • interface edu.mssm.crover.representation.BiologicalAlignment
  • interface edu.mssm.crover.representation.BiologicalAnnotation (also extends java.io.Serializable)
  • interface edu.mssm.crover.representation.BiologicalAnnotations
  • interface edu.mssm.crover.representation.BiologicalDescription
    • interface edu.mssm.crover.representation.Description
  • interface edu.mssm.crover.representation.BiologicalOrigin
  • interface edu.mssm.crover.representation.BiologicalSequence
    • interface edu.mssm.crover.representation.AnnotatedBioSequence (also extends edu.mssm.crover.representation.AnnotationSupport)
• interface edu.mssm.crover.util.ScoreEngine
• interface edu.mssm.crover.domain2d.SelectedModelInterface
  • interface edu.mssm.crover.domain2d.HelixModel (also extends edu.mssm.crover.domain2d.AbstractModel, edu.mssm.crover.domain2d.BrushingModelInterface, edu.mssm.crover.domain2d.DraggingModelInterface)
• interface edu.mssm.crover.ssedit.SequenceRange
• interface edu.mssm.crover.imports.SequenceReader
• interface edu.mssm.crover.imports.SequenceReaderFactory
• interface java.io.Serializable
  • interface edu.mssm.crover.representation.BiologicalAnnotation (also extends edu.mssm.crover.representation.RootObject)
  • interface edu.mssm.crover.webservices.rbde.CustomizedDiagram
    • interface edu.mssm.crover.webservices.rbde.CustomizedDiagram2_0
  • interface edu.mssm.crover.ims.tasks.TaskData
  • interface edu.mssm.crover.scentral.UpgradableObject
  • interface edu.mssm.crover.scentral.WebService
• interface edu.mssm.crover.scentral.SimpleMailer
• interface edu.mssm.crover.domain2d.Solver
• interface edu.mssm.crover.tables.StringAppender
• interface edu.mssm.crover.tables.StringConverter
• interface edu.mssm.crover.tables.Table
• interface edu.mssm.crover.tables.readers.TableReader
• interface edu.mssm.crover.ims.tasks.TaskControl
• interface edu.mssm.crover.ims.tasks.TaskEngine
• interface edu.mssm.crover.ims.tasks.TaskListener
• interface edu.mssm.crover.tools.tissue.TissueInfo
• interface edu.mssm.crover.tools.tissue.TIWeb
• interface edu.mssm.crover.util.TmPredictor
• interface edu.mssm.crover.ims.TransactionManager
• interface edu.mssm.crover.tables.treatments.Treatment
• interface edu.mssm.crover.scentral.URLRepository
• interface edu.mssm.crover.scentral.UserDirectory
• interface edu.mssm.crover.scentral.UserRecord
• interface edu.mssm.crover.tables.ValueComparator
• interface edu.mssm.crover.tables.ValueCopier