edu.mssm.crover.webservices.rbde
Class SwissProtSearchURL

java.lang.Object
  |
  +--edu.mssm.crover.webservices.rbde.SwissProtSearchURL

public class SwissProtSearchURL

extends java.lang.Object

Allows to retrieve sequences (AnnotatedBioSequence[]) from SwissProt database. Use setID() or setAccessionNumber() and then getSequence() or getURL().

See Also:

AnnotatedBioSequence

Constructor Summary

SwissProtSearchURL()

Method Summary

AnnotatedBioSequence[]	getSequence() Retrieves an array of AnnotatedBioSequence-s from SwissProt database based on the sequence ID or accession number
java.lang.String	getURL() Retrieves the URL page with the sequence entry under the set sequence ID or accession number from SwissProt.
SwissProtSearchURL	setAccessionNumber(java.lang.String accn) Sets accession number to accn and sequence ID to null.
SwissProtSearchURL	setID(java.lang.String idin) Sets sequence ID to idin and accession number to null.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SwissProtSearchURL

public SwissProtSearchURL()

Method Detail

setAccessionNumber

public SwissProtSearchURL setAccessionNumber(java.lang.String accn)

Sets accession number to accn and sequence ID to null.

setID

public SwissProtSearchURL setID(java.lang.String idin)

Sets sequence ID to idin and accession number to null.

getSequence

public AnnotatedBioSequence[] getSequence()

Retrieves an array of AnnotatedBioSequence-s from SwissProt database based on the sequence ID or accession number

getURL

public java.lang.String getURL()

Retrieves the URL page with the sequence entry under the set sequence ID or accession number from SwissProt.