edu.mssm.crover.webservices.rbde
Class MutantSubServiceState

java.lang.Object
  |
  +--edu.mssm.crover.webservices.rbde.MutantSubServiceState

public class MutantSubServiceState

extends java.lang.Object

Holds the mutant sub-service state. This class holds several data that the mutant subservice relies upon. This class is not serialized because the nature of this data is transient: a new state object is initialized each time the user logs in the service.

Field Summary

static int	CHOOSE_SERVER The server has not been chosen: have the user choose it.
boolean	filter_cumulative
boolean	filter_exact_cumulative
static int	INVALID_INTERACTION_STATE This state is invalid.
static int	QUERY_DISPLAY There is a server: query and display for this ac/db.

Constructor Summary

MutantSubServiceState()

Method Summary

void	clearSelection() Clears the selection.
java.lang.String	getAccessionCode()
Mutant	getCachedMutant(java.lang.String mutantID) Obtain the mutant that match this mutantID from the cache.
short	getCumulativeFilter()
java.lang.String	getDatabank()
boolean	getFilterCumulative()
boolean	getFilterExactCumulative()
boolean	getFilterPure()
int	getInteractionState()
short	getPureFilter()
java.util.Iterator	getSelectedMutants() Give read-access to the set of selected mutants.
java.lang.String	getServer()
void	selectAllFilteredMutants() Select all the mutants which are in the cache.
void	selectMutant(Mutant mutant) Add the mutant that correspond to this mutant-id to the list of selected mutants.
void	selectMutant(java.lang.String mutantID) Add the mutant that correspond to this mutant-id to the list of selected mutants.
void	setAccessionCode(java.lang.String _ac)
void	setCumulativeFilter(short _cumulative)
void	setDatabank(java.lang.String _db)
void	setFilterCumulative(boolean _filter_cumulative)
void	setFilterExactCumulative(boolean _filter_exact_cumulative)
void	setFilterPure(boolean _filter_pure)
void	setLastMutantQueryResult(Mutant[] mutants) Cache the result of the last mutant query in the session.
void	setPureFilter(short _pure)
void	setServer(java.lang.String _server)
void	unselectAllFilteredMutants() Unselect all the mutants which are in the cache.
void	unselectMutant(Mutant mutant) Removes the mutant that correspond to this mutant-id from the list of selected mutants.
void	unselectMutant(java.lang.String mutantID) Removes the mutant that correspond to this mutant-id from the list of selected mutants.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

filter_exact_cumulative

public boolean filter_exact_cumulative

filter_cumulative

public boolean filter_cumulative

CHOOSE_SERVER

public static final int CHOOSE_SERVER

The server has not been chosen: have the user choose it.

See Also:

Constant Field Values

QUERY_DISPLAY

public static final int QUERY_DISPLAY

There is a server: query and display for this ac/db.

See Also:

Constant Field Values

INVALID_INTERACTION_STATE

public static final int INVALID_INTERACTION_STATE

This state is invalid. This should not happen.

See Also:

Constant Field Values

Constructor Detail

MutantSubServiceState

public MutantSubServiceState()

Method Detail

setServer

public void setServer(java.lang.String _server)

getServer

public java.lang.String getServer()

setAccessionCode

public void setAccessionCode(java.lang.String _ac)

getAccessionCode

public java.lang.String getAccessionCode()

setDatabank

public void setDatabank(java.lang.String _db)

getDatabank

public java.lang.String getDatabank()

setPureFilter

public void setPureFilter(short _pure)

getPureFilter

public short getPureFilter()

setCumulativeFilter

public void setCumulativeFilter(short _cumulative)

getCumulativeFilter

public short getCumulativeFilter()

setFilterPure

public void setFilterPure(boolean _filter_pure)

getFilterPure

public boolean getFilterPure()

setFilterCumulative

public void setFilterCumulative(boolean _filter_cumulative)

getFilterCumulative

public boolean getFilterCumulative()

setFilterExactCumulative

public void setFilterExactCumulative(boolean _filter_exact_cumulative)

getFilterExactCumulative

public boolean getFilterExactCumulative()

getInteractionState

public int getInteractionState()

selectMutant

public void selectMutant(java.lang.String mutantID)

Add the mutant that correspond to this mutant-id to the list of selected mutants.

selectMutant

public void selectMutant(Mutant mutant)

Add the mutant that correspond to this mutant-id to the list of selected mutants.

selectAllFilteredMutants

public void selectAllFilteredMutants()

Select all the mutants which are in the cache.

unselectAllFilteredMutants

public void unselectAllFilteredMutants()

Unselect all the mutants which are in the cache.

clearSelection

public void clearSelection()

Clears the selection. Remove all the mutants from the selected set.

unselectMutant

public void unselectMutant(java.lang.String mutantID)

Removes the mutant that correspond to this mutant-id from the list of selected mutants.

unselectMutant

public void unselectMutant(Mutant mutant)

Removes the mutant that correspond to this mutant-id from the list of selected mutants.

getSelectedMutants

public java.util.Iterator getSelectedMutants()

Give read-access to the set of selected mutants.

Returns:

an iterator over Mutant instances.

setLastMutantQueryResult

public void setLastMutantQueryResult(Mutant[] mutants)

Cache the result of the last mutant query in the session. This is intended to allow two servlets, one that make the query of mutants, and the second that need to perform some processing on one mutant, or a group of them, to exchange only mutation-ids of the mutants, not a reference to an object.

getCachedMutant

public Mutant getCachedMutant(java.lang.String mutantID)

Obtain the mutant that match this mutantID from the cache. The result is transient because it should be obtained from the mutation server instead of being retrieved from a session. It makes no sense to store persistently an information that will not be uptodate very soon.