edu.mssm.crover.webservices.rbde
Class FastDiagramMode

java.lang.Object
  |
  +--javax.servlet.GenericServlet
        |
        +--javax.servlet.http.HttpServlet
              |
              +--edu.mssm.crover.webservices.rbde.FastDiagramMode

All Implemented Interfaces:

java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig

public class FastDiagramMode

extends javax.servlet.http.HttpServlet

Servlet that constructs an HTML page that displays sequence entered in servlet Start. With supplied accession number or sequence code it retrieves first the sequence from Swiss Prot database.

See Also:

Serialized Form

Constructor Summary

FastDiagramMode()

Method Summary

static void	cleanTmAnnotationsForRbDe(BiologicalAnnotations ba) Removes all TmAnnotations from ba.
void	doGet(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)
void	doPost(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)
long	getLastModified(javax.servlet.http.HttpServletRequest request)
static org.apache.ecs.Element	postSequence(int residues_per_line, java.lang.String title, AnnotatedBioSequence seq, ServletCentral sc)
static int	rankOrder(int number)
static void	translateNtermLocationForRbDe(TmDomain_Annotation tms, DS_UserSession us)
static void	translateTmDomainForRbDe(BiologicalAnnotations ba, TmDomain_Annotation tms)

Methods inherited from class javax.servlet.http.HttpServlet

doDelete, doHead, doOptions, doPut, doTrace, service, service

Methods inherited from class javax.servlet.GenericServlet

destroy, getInitParameter, getInitParameterNames, getServletConfig, getServletContext, getServletInfo, getServletName, init, init, log, log

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FastDiagramMode

public FastDiagramMode()

Method Detail

doPost

public void doPost(javax.servlet.http.HttpServletRequest request,
                   javax.servlet.http.HttpServletResponse response)
            throws java.io.IOException,
                   javax.servlet.ServletException

Overrides:

doPost in class javax.servlet.http.HttpServlet

java.io.IOException

javax.servlet.ServletException

translateTmDomainForRbDe

public static void translateTmDomainForRbDe(BiologicalAnnotations ba,
                                            TmDomain_Annotation tms)

translateNtermLocationForRbDe

public static void translateNtermLocationForRbDe(TmDomain_Annotation tms,
                                                 DS_UserSession us)

cleanTmAnnotationsForRbDe

public static void cleanTmAnnotationsForRbDe(BiologicalAnnotations ba)

Removes all TmAnnotations from ba.

doGet

public void doGet(javax.servlet.http.HttpServletRequest request,
                  javax.servlet.http.HttpServletResponse response)
           throws java.io.IOException,
                  javax.servlet.ServletException

Overrides:

doGet in class javax.servlet.http.HttpServlet

java.io.IOException

javax.servlet.ServletException

getLastModified

public long getLastModified(javax.servlet.http.HttpServletRequest request)

Overrides:

getLastModified in class javax.servlet.http.HttpServlet

postSequence

public static org.apache.ecs.Element postSequence(int residues_per_line,
                                                  java.lang.String title,
                                                  AnnotatedBioSequence seq,
                                                  ServletCentral sc)

rankOrder

public static int rankOrder(int number)